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Updated: Dec 11, 2025

Experimental and Data Analysis Workflow for Soft Matter Nanoindentation
Published on: January 18, 2022
Indenting soft samples (hydrogels and cells) with cantilevers possessing various shapes of probing tip
Joanna Zemła1, Justyna Bobrowska2, Andrzej Kubiak2
1Institute of Nuclear Physics Polish Academy of Sciences, PL-31342, Kraków, Poland. Joanna.Zemla@ifj.edu.pl.
Abstract:
The identification of cancer-related changes in cells and tissues based on the measurements of elastic properties using atomic force microscopy (AFM) seems to be approaching clinical application. Several limiting aspects have already been discussed; however, still, no data have shown how specific AFM probe geometries are related to the biomechanical evaluation of cancer cells. Here, we analyze and compare the nanomechanical results of mechanically homogenous polyacrylamide gels and heterogeneous bladder cancer cells measured using AFM probes of various tip geometry, including symmetric and non-symmetric pyramids and a sphere. Our observations show large modulus variability aligned with both types of AFM probes used and with the internal structure of the cells. Altogether, these results demonstrate that it is possible to differentiate between compliant and rigid samples of kPa elasticity; however, simultaneously, they highlight the strong need for standardized protocols for AFM-based elasticity measurements if applied in clinical practice including the use of a single type of AFM cantilever.
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