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Published on: March 3, 2023
A database of integrated molecular and phytochemical interactions of the foxm1 pathway for lung cancer
Nilubon Kurubanjerdjit1, Ka-Lok Ng2,3
1School of Information Technology, Mae Fah Luang University, Chiangrai, Thailand.
Abstract:
The FoxM1 pathway is an oncogenic signaling pathway involved in essential mechanisms including control cell-cycle progression, apoptosis and cell growth which are the common hallmarks of various cancers. Although its biological functions in the tumor development and progression are known, the mechanism by which it participates in those processes is not understood. The present work reveals images of the oncogenic FoxM1 pathway controlling the cell cycle process with alternative treatment options via phytochemical substances in the lung cancer study. The downstream significant protein modules of the FoxM1 pathway were extracted by the Molecular Complex Detection (MCODE) and the maximal clique (Mclique) algorithms. Furthermore, the effects of post-transcriptional modification by microRNA, transcription factor binding and the phytochemical compounds are observed through their interactions with the lung cancer protein modules. We provided two case studies to demonstrate the usefulness of our database. Our results suggested that the combination of various phytochemicals is effective in the treatment of lung cancer. The ultimate goal of the present work is to partly support the discovery of plant-derived compounds in combination treatment of classical chemotherapeutic agents to increase the efficacy of lung cancer method probably with minor side effects. Furthermore, a web-based system displaying results of the present work is set up for investigators posing queries at http://sit.mfu.ac.th/lcgdb/index_FoxM1.php.Communicated by Ramaswamy H. Sarma.
Insights
This study explores the FoxM1 pathway in lung cancer, identifying phytochemicals as potential treatments. Combining these natural compounds may enhance lung cancer therapy with fewer side effects.
Area of Science:
- Oncology
- Molecular Biology
- Bioinformatics
Background:
- The FoxM1 pathway is crucial for cell-cycle progression, apoptosis, and growth, acting as an oncogenic driver in various cancers.
- While FoxM1's role in tumor development is known, its precise mechanisms in cancer progression remain unclear.
- Understanding these mechanisms is vital for developing targeted lung cancer therapies.
Purpose of the Study:
- To investigate the oncogenic FoxM1 pathway in lung cancer.
- To identify alternative treatment strategies using phytochemical substances.
- To elucidate the molecular mechanisms underlying FoxM1's role in lung cancer progression.
Main Methods:
- Utilized Molecular Complex Detection (MCODE) and maximal clique (Mclique) algorithms to identify downstream protein modules of the FoxM1 pathway.
- Analyzed interactions of microRNAs, transcription factors, and phytochemical compounds with lung cancer protein modules.
- Developed a web-based system for data accessibility and query submission.
Main Results:
- Identified key protein modules within the FoxM1 pathway critical for lung cancer.
- Observed the influence of post-transcriptional modifications and phytochemicals on these modules.
- Demonstrated the potential of combined phytochemicals for lung cancer treatment through case studies.
Conclusions:
- Phytochemical compounds show promise as alternative or complementary treatments for lung cancer.
- Combination therapy with phytochemicals and conventional agents may improve efficacy and reduce side effects.
- The developed database serves as a valuable resource for researchers investigating the FoxM1 pathway in lung cancer.
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