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Exon Recombination02:32

Exon Recombination

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The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon...
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Conservation of Protein Domains Over Different Proteins02:26

Conservation of Protein Domains Over Different Proteins

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Protein domains are small structurally independent units that are part of a single amino acid chain.  Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
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GTPases and their Regulation02:14

GTPases and their Regulation

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GTPases and their Regulation02:14

GTPases and their Regulation

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Guanine nucleotide-binding proteins (G-proteins), also known as GTPases, are a superfamily of proteins that regulate many cellular processes, such as cell signaling, vesicular transport, and the regulation of cell shape and motility. Mutation or dysfunction of these proteins can lead to disease. There are around 40,000 known G-proteins that can broadly be classified into two groups ‒  small G-proteins consisting of a single domain and large multi-domain G-proteins.
Large G-proteins,...
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Related Experiment Video

Updated: Dec 10, 2025

Xenopus laevis as a Model to Identify Translation Impairment
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Newly identified Gon4l/Udu-interacting proteins implicate novel functions.

Su-Mei Tsai1, Kuo-Chang Chu1, Yun-Jin Jiang2,3,4,5,6

  • 1Institute of Molecular and Genomic Medicine, National Health Research Institutes, Zhunan, Miaoli County, Taiwan.

Scientific Reports
|August 28, 2020
PubMed
Summary

Gon4l/Udu interacts with novel proteins, revealing new mechanisms in gene regulation, DNA repair, and cellular processes. These interactions explain diverse phenotypes observed in Gon4l/Udu mutant animals.

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Area of Science:

  • Molecular Biology
  • Genetics
  • Developmental Biology

Background:

  • Mutations in the Gon4l/udu gene cause varied phenotypes across species.
  • Existing knowledge of Gon4l/Udu's role in transcriptional regulation is insufficient to explain all observed characteristics.

Purpose of the Study:

  • To identify novel Gon4l/Udu-interacting proteins in zebrafish and mouse models.
  • To elucidate the functional mechanisms of Gon4l/Udu by analyzing its interactome and associated phenotypes.

Main Methods:

  • Yeast two-hybrid (Y2H) screening to identify interacting proteins.
  • Co-immunoprecipitation assays to confirm protein interactions.
  • Phenotype Enrichment Analysis of known and newly identified Gon4l/Udu-interacting proteins.

Main Results:

  • Identified four novel Gon4l-interacting proteins: Bap1, Dnmt1, Thoc1, and Cry3a.
  • Phenotype Enrichment Analysis revealed key affected processes including apoptosis, embryonic lethality, lymphoma incidence, cell proliferation, genomic stability, and dopamine levels.
  • Expression patterns of Bap1, Dnmt1, Thoc1, and Cry3a overlap with udu expression in the brain and other tissues.

Conclusions:

  • Gon4l/Udu participates in regulating CpG methylation, histone modification, DNA repair, and RNA processing.
  • These novel interactions provide insights into the molecular basis of Gon4l/Udu-related phenotypes.
  • The findings suggest multifaceted roles for Gon4l/Udu in maintaining cellular and organismal homeostasis.