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Updated: Dec 10, 2025

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Role of DNA Methylation in the Resistance to Therapy in Solid Tumors
Susana Romero-Garcia1, Heriberto Prado-Garcia1, Angeles Carlos-Reyes1
1Department of Chronic-Degenerative Diseases, National Institute of Respiratory Diseases "Ismael Cosío Villegas", Mexico City, Mexico.
Abstract:
Despite the recent advances in chemotherapeutic treatments against cancer, some types of highly aggressive and invasive cancer develop drug resistance against conventional therapies, which continues to be a major problem in the fight against cancer. In recent years, studies of alterations of DNA methylome have given us a better understanding of the role of DNA methylation in the development of tumors. DNA methylation (DNAm) is an epigenetic change that promotes the covalent transfer of methyl groups to DNA. This process suppresses gene expression through the modulation of the transcription machinery access to the chromatin or through the recruitment of methyl binding proteins. DNAm is regulated mainly by DNA methyltransferases. Aberrant DNAm contributes to tumor progression, metastasis, and resistance to current anti-tumoral therapies. Aberrant DNAm may occur through hypermethylation in the promoter regions of tumor suppressor genes, which leads to their silencing, while hypomethylation in the promoter regions of oncogenes can activate them. In this review, we discuss the impact of dysregulated methylation in certain genes, which impact signaling pathways associated with apoptosis avoidance, metastasis, and resistance to therapy. The analysis of methylome has revealed patterns of global methylation, which regulate important signaling pathways involved in therapy resistance in different cancer types, such as breast, colon, and lung cancer, among other solid tumors. This analysis has provided gene-expression signatures of methylated region-specific DNA that can be used to predict the treatment outcome in response to anti-cancer therapy. Additionally, changes in cancer methylome have been associated with the acquisition of drug resistance. We also review treatments with demethylating agents that, in combination with standard therapies, seem to be encouraging, as tumors that are in early stages can be successfully treated. On the other hand, tumors that are in advanced stages can be treated with these combination schemes, which could sensitize tumor cells that are resistant to the therapy. We propose that rational strategies, which combine specific demethylating agents with conventional treatment, may improve overall survival in cancer patients.
Insights
DNA methylation (DNAm) alterations drive cancer drug resistance and metastasis. Analyzing cancer methylomes reveals patterns predicting treatment outcomes and suggests demethylating agents combined with standard therapies may improve survival.
Area of Science:
- Epigenetics
- Cancer Biology
- Genomics
Background:
- Drug resistance in aggressive cancers remains a significant challenge.
- DNA methylation (DNAm) is a key epigenetic mechanism influencing gene expression.
- Aberrant DNAm is implicated in tumor progression, metastasis, and therapy resistance.
Purpose of the Study:
- To review the impact of dysregulated DNA methylation on cancer signaling pathways.
- To explore the role of methylome analysis in predicting treatment response.
- To discuss the therapeutic potential of demethylating agents in combination with conventional treatments.
Main Methods:
- Review of scientific literature on DNA methylation and cancer.
- Analysis of methylome patterns in various cancer types (e.g., breast, colon, lung).
- Examination of gene-expression signatures associated with DNA methylation.
Main Results:
- Dysregulated DNAm affects pathways controlling apoptosis, metastasis, and therapy resistance.
- Methylome analysis identifies patterns linked to treatment outcomes and drug resistance.
- Demethylating agents show promise in sensitizing resistant tumors to therapy.
Conclusions:
- Aberrant DNA methylation is a critical factor in cancer development and treatment failure.
- Methylome profiling offers predictive biomarkers for anti-cancer therapy.
- Combination strategies using demethylating agents and standard therapies may enhance patient survival.
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