Doxorubicin exhibits strong and selective association with VEGF Pu22 G-quadruplex

Ecenaz Bilgen1, Özgül Persil Çetinkol1

  • 1Department of Chemistry, Middle East Technical University, 06800, Çankaya, Ankara, Turkey.

Abstract

Insights

Doxorubicin (Dox) selectively binds to a specific G4 structure in the VEGF promoter, similar to its DNA interactions. This finding may explain Doxorubicin's anti-tumor effects by targeting VEGF.

Area of Science:

  • Biochemistry
  • Molecular Biology
  • Drug Discovery

Background:

  • Vascular endothelial growth factor (VEGF) is upregulated in tumors, making it a therapeutic target.
  • Doxorubicin (Dox) is an anti-cancer drug with incompletely understood mechanisms.
  • VEGF-targeting siRNAs and VEGF-B gene therapy show potential in enhancing anti-cancer effects and reducing Dox cardiotoxicity.

Purpose of the Study:

  • To investigate the interactions between Doxorubicin and a G-quadruplex (G4) structure in the VEGF promoter region (Pu22).
  • To determine the binding affinity and selectivity of Doxorubicin to the VEGF Pu22 G4 structure.

Main Methods:

  • Competition dialysis
  • UV-vis Absorption spectroscopy
  • Circular Dichroism (CD) spectroscopy
  • Fluorescence spectroscopy

Main Results:

  • Doxorubicin stabilizes the VEGF Pu22 G4 structure.
  • The association constant (Ka) for Dox-VEGF Pu22 G4 complex is 7.50 × 10^6, comparable to Dox-dsDNA interactions.
  • Doxorubicin shows selectivity for VEGF Pu22 G4 over other G4 structures (BCL-2, C-myc).

Conclusions:

  • Doxorubicin exhibits strong and selective binding to the VEGF Pu22 G4 structure.
  • This interaction may contribute to Doxorubicin's anti-tumor activity by targeting VEGF.

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