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Updated: Dec 9, 2025

Comprehensive Autopsy Program for Individuals with Multiple Sclerosis
Published on: July 19, 2019
Histopathology-validated recommendations for cortical lesion imaging in multiple sclerosis
Piet M Bouman1, Martijn D Steenwijk1, Petra J W Pouwels2
1Department of Anatomy and Neurosciences, MS Center Amsterdam, Amsterdam Neuroscience, Amsterdam, The Netherlands.
Abstract:
Cortical demyelinating lesions are clinically important in multiple sclerosis, but notoriously difficult to visualize with MRI. At clinical field strengths, double inversion recovery MRI is most sensitive, but still only detects 18% of all histopathologically validated cortical lesions. More recently, phase-sensitive inversion recovery was suggested to have a higher sensitivity than double inversion recovery, although this claim was not histopathologically validated. Therefore, this retrospective study aimed to provide clarity on this matter by identifying which MRI sequence best detects histopathologically-validated cortical lesions at clinical field strength, by comparing sensitivity and specificity of the thus far most commonly used MRI sequences, which are T2, fluid-attenuated inversion recovery (FLAIR), double inversion recovery and phase-sensitive inversion recovery. Post-mortem MRI was performed on non-fixed coronal hemispheric brain slices of 23 patients with progressive multiple sclerosis directly after autopsy, at 3 T, using T1 and proton-density/T2-weighted, as well as FLAIR, double inversion recovery and phase-sensitive inversion recovery sequences. A total of 93 cortical tissue blocks were sampled from these slices. Blinded to histopathology, all MRI sequences were consensus scored for cortical lesions. Subsequently, tissue samples were stained for proteolipid protein (myelin) and scored for cortical lesion types I-IV (mixed grey matter/white matter, intracortical, subpial and cortex-spanning lesions, respectively). MRI scores were compared to histopathological scores to calculate sensitivity and specificity per sequence. Next, a retrospective (unblinded) scoring was performed to explore maximum scoring potential per sequence. Histopathologically, 224 cortical lesions were detected, of which the majority were subpial. In a mixed model, sensitivity of T1, proton-density/T2, FLAIR, double inversion recovery and phase-sensitive inversion recovery was 8.9%, 5.4%, 5.4%, 22.8% and 23.7%, respectively (20, 12, 12, 51 and 53 cortical lesions). Specificity of the prospective scoring was 80.0%, 75.0%, 80.0%, 91.1% and 88.3%. Sensitivity and specificity did not significantly differ between double inversion recovery and phase-sensitive inversion recovery, while phase-sensitive inversion recovery identified more lesions than double inversion recovery upon retrospective analysis (126 versus 95; P < 0.001). We conclude that, at 3 T, double inversion recovery and phase-sensitive inversion recovery sequences outperform conventional sequences T1, proton-density/T2 and FLAIR. While their overall sensitivity does not exceed 25%, double inversion recovery and phase-sensitive inversion recovery are highly pathologically specific when using existing scoring criteria and their use is recommended for optimal cortical lesion assessment in multiple sclerosis.
Insights
Double inversion recovery and phase-sensitive inversion recovery MRI sequences show higher sensitivity for detecting cortical lesions in multiple sclerosis than conventional MRI. These advanced sequences are recommended for improved lesion assessment, despite overall sensitivity remaining below 25%.
Area of Science:
- Neuroimaging
- Radiology
- Pathology
Background:
- Cortical demyelinating lesions are crucial in multiple sclerosis (MS) but difficult to detect via MRI.
- Current MRI techniques, including double inversion recovery (DIR), have limited sensitivity for histopathologically validated cortical lesions.
- Phase-sensitive inversion recovery (PSIR) has been proposed as a more sensitive alternative to DIR, but lacked histopathological validation.
Purpose of the Study:
- To compare the sensitivity and specificity of commonly used MRI sequences (T2, FLAIR, DIR, PSIR) for detecting histopathologically validated cortical lesions in progressive multiple sclerosis at clinical field strength.
- To determine which MRI sequence offers the best visualization of cortical lesions in MS.
Main Methods:
- Retrospective analysis of post-mortem MRI on brain slices from 23 MS patients at 3 Tesla.
- Comparison of T1, proton-density/T2, FLAIR, DIR, and PSIR sequences against histopathological staining for myelin (proteolipid protein).
- Calculation of sensitivity and specificity for each MRI sequence, including a retrospective unblinded analysis to assess maximum potential.
Main Results:
- Histopathology revealed 224 cortical lesions, predominantly subpial.
- Sensitivity for T1, PD/T2, FLAIR, DIR, and PSIR was 8.9%, 5.4%, 5.4%, 22.8%, and 23.7%, respectively.
- DIR and PSIR showed significantly higher sensitivity and specificity compared to conventional sequences, with PSIR identifying more lesions in retrospective analysis.
Conclusions:
- At 3 Tesla, DIR and PSIR MRI sequences are superior to T1, PD/T2, and FLAIR for detecting cortical lesions in multiple sclerosis.
- While sensitivity remains under 25%, DIR and PSIR offer high pathological specificity and are recommended for optimal cortical lesion assessment in MS.
- PSIR demonstrated a slight advantage over DIR in retrospective lesion detection, warranting further investigation.

