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Forming, Confining, and Observing Microtubule-Based Active Nematics
Published on: January 13, 2023
Intelligent behaviors of amoeboid movement based on complex dynamics of soft matter
Toshiyuki Nakagaki1, Robert D Guy2
1Creative Research Initiative SOUSEI, Hokkaido University, 001-0021 Sapporo, Japan and Research Institute for Electronic Science, Hokkaido University, 060-0812 Sapporo, Japan. nakagaki@es.hokudai.ac.jp.
Abstract:
We review how soft matter is self-organized to perform information processing at the cell level by examining the model organism Physarum plasmodium. The amoeboid organism, Physarum polycephalum, in the class of true slime molds, exhibits the intelligent behavior of foraging in complex situations. When placed in a maze with food sources at two exits, the organism develops tubular structures with its body which connect the food sources along the shortest path so that the rates of nutrient absorption and intracellular communication are maximized. This intelligent behavior results from the organism's control of a dynamic network through which mechanical and chemical information is transmitted. We review experimental studies that explore the development and adaptation of structures that make up the network. Recently a model of the dynamic network has been developed, and we review the formulation of this model and present some key results. The model captures the dynamics of existing networks, but it does not answer the question of how such networks form initially. To address the development of cell shape, we review existing mechanochemical models of the protoplasm of Physarum, present more general models of motile cells, and discuss how to adapt existing models to explore the development of intelligent networks in Physarum.
Insights
Physarum plasmodium, a slime mold, self-organizes its cellular structures to process information and find the shortest path to food. This intelligent foraging behavior emerges from its dynamic internal network.
Area of Science:
- Soft matter physics
- Cellular information processing
- Biophysics
Background:
- Physarum plasmodium exhibits complex foraging behavior, navigating mazes to find food sources efficiently.
- This intelligent behavior involves the formation of tubular structures that optimize nutrient absorption and intracellular communication.
- The organism's actions are governed by a dynamic internal network transmitting mechanical and chemical signals.
Purpose of the Study:
- To review how soft matter self-organization in Physarum enables cellular-level information processing.
- To examine experimental studies on the development and adaptation of Physarum's dynamic network structures.
- To discuss mechanochemical models for understanding Physarum's cell shape development and network formation.
Main Methods:
- Review of experimental studies on Physarum plasmodium's structure and behavior.
- Analysis of a recently developed model for Physarum's dynamic network.
- Examination of mechanochemical models for protoplasm and general motile cells.
Main Results:
- Physarum optimizes nutrient absorption and communication by forming shortest-path networks.
- A dynamic network model captures existing network behavior but not initial formation.
- Mechanochemical models offer insights into cell shape and intelligent network development.
Conclusions:
- Physarum plasmodium demonstrates sophisticated information processing through self-organized soft matter.
- Further development of mechanochemical models is needed to explain the initial formation of these intelligent networks.
- Understanding Physarum's network dynamics can provide insights into self-organization and information processing in biological systems.
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