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Updated: Dec 9, 2025

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
METTL6 is a tRNA m3C methyltransferase that regulates pluripotency and tumor cell growth
Valentina V Ignatova1, Steffen Kaiser2, Jessica Sook Yuin Ho3,4
1Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany.
Abstract:
Recently, covalent modifications of RNA, such as methylation, have emerged as key regulators of all aspects of RNA biology and have been implicated in numerous diseases, for instance, cancer. Here, we undertook a combination of in vitro and in vivo screens to test 78 potential methyltransferases for their roles in hepatocellular carcinoma (HCC) cell proliferation. We identified methyltransferase-like protein 6 (METTL6) as a crucial regulator of tumor cell growth. We show that METTL6 is a bona fide transfer RNA (tRNA) methyltransferase, catalyzing the formation of 3-methylcytidine at C32 of specific serine tRNA isoacceptors. Deletion of Mettl6 in mouse stem cells results in changes in ribosome occupancy and RNA levels, as well as impaired pluripotency. In mice, Mettl6 knockout results in reduced energy expenditure. We reveal a previously unknown pathway in the maintenance of translation efficiency with a role in maintaining stem cell self-renewal, as well as impacting tumor cell growth profoundly.
Insights
Methyltransferase-like protein 6 (METTL6) regulates hepatocellular carcinoma (HCC) cell growth by methylating transfer RNA (tRNA). METTL6 is crucial for stem cell renewal and impacts tumor cell proliferation.
Area of Science:
- Biochemistry
- Molecular Biology
- Oncology
Background:
- RNA modifications, including methylation, are vital regulators of RNA biology.
- These modifications are increasingly linked to various diseases, notably cancer.
- Hepatocellular carcinoma (HCC) progression is influenced by complex molecular mechanisms.
Purpose of the Study:
- To identify novel methyltransferases involved in hepatocellular carcinoma (HCC) cell proliferation.
- To elucidate the specific role and mechanism of action of identified methyltransferases in cancer and stem cell biology.
Main Methods:
- In vitro and in vivo screening of 78 potential methyltransferases.
- Biochemical assays to characterize methyltransferase activity.
- Genetic manipulation (gene deletion/knockout) in mouse models and cell lines.
Main Results:
- Methyltransferase-like protein 6 (METTL6) was identified as a key regulator of HCC cell growth.
- METTL6 was confirmed as a transfer RNA (tRNA) methyltransferase, catalyzing 3-methylcytidine formation at C32 of specific serine tRNA isoacceptors.
- Mettl6 deletion in mouse stem cells impaired pluripotency and altered ribosome occupancy and RNA levels.
- Mettl6 knockout in mice led to reduced energy expenditure.
Conclusions:
- METTL6 is a critical regulator of stem cell self-renewal through its role in maintaining translation efficiency.
- METTL6 significantly impacts hepatocellular carcinoma cell proliferation, presenting a potential therapeutic target.
- This study reveals a novel pathway involving tRNA methylation in stem cell maintenance and cancer biology.
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