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Mass Spectrometry: Molecular Fragmentation Overview01:20

Mass Spectrometry: Molecular Fragmentation Overview

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The ionization of a molecule into a molecular ion inside the mass spectrometer causes instability in the molecule's structure due to the loss of an electron. This eventually leads to the fragmentation or breaking of some bonds in the molecule. The fragmentation occurs predominantly at specific bonds to yield relatively stable fragments.
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The Quantum-Mechanical Model of an Atom02:45

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Shortly after de Broglie published his ideas that the electron in a hydrogen atom could be better thought of as being a circular standing wave instead of a particle moving in quantized circular orbits, Erwin Schrödinger extended de Broglie’s work by deriving what is now known as the Schrödinger equation. When Schrödinger applied his equation to hydrogen-like atoms, he was able to reproduce Bohr’s expression for the energy and, thus, the Rydberg formula governing hydrogen spectra.
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Tandem Mass Spectrometry

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Tandem mass spectrometry is a technique that uses multiple mass analyzers in series to obtain a higher selectivity and signal-to-noise ratio for the analyte. Instruments with multiple analyzers separated by an interaction cell enable secondary fragmentation and selected study of the fragment ions.
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Atomic Absorption Spectroscopy (AAS) atomizes samples through flame atomization or electrothermal atomization. Flame atomization typically involves a nebulizer and spray chamber assembly to combine the sample with a fuel–oxidant mixture, creating a fine aerosol mist that enters a burner. Typically, the fuel and oxidant are combined in an approximately stoichiometric ratio. However, for atoms that are easily oxidized, a fuel-rich mixture may be more advantageous. Only about 5% of the...
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Mass spectrometry is an analytical technique used to determine the molecular mass and molecular formula of a compound. The basic principle of mass spectrometry is to generate ions from the analyte molecule and measure these ion abundances against their molecular mass.  One common type of ionization, known as electrospray ionization or EI, bombards the analyte molecules in the gas phase with high-energy electron beams. The electron beams displace an electron from the molecule and leave...
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Mass Spectrometers01:16

Mass Spectrometers

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This lesson details the instrumentation of a mass spectrometer—a physical instrument to perform mass spectrometry on analyte molecules and record the characteristic mass spectra. This is achieved via three chief functions:
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Quantum machine learning using atom-in-molecule-based fragments selected on the fly.

Bing Huang1, O Anatole von Lilienfeld2

  • 1Institute of Physical Chemistry and National Center for Computational Design and Discovery of Novel Materials (MARVEL), Department of Chemistry, University of Basel, Basel, Switzerland.

Nature Chemistry
|September 15, 2020
PubMed
Summary
This summary is machine-generated.

This study introduces an active learning approach using atom-in-molecule fragments (amons) to accelerate the exploration of chemical space for designing new molecules and materials. The developed quantum machine learning models demonstrate efficiency and accuracy across diverse chemical systems.

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Area of Science:

  • Computational Chemistry
  • Quantum Mechanics
  • Materials Science

Background:

  • Exploring chemical space for new molecules and materials is crucial but computationally expensive.
  • Current quantum chemistry methods face limitations in comprehensive in silico screening due to high computational costs.

Purpose of the Study:

  • To develop a computationally efficient and accurate method for exploring chemical space.
  • To overcome the limitations of traditional in silico screening methods.
  • To design novel molecules, materials, and experiments.

Main Methods:

  • Combining atom-in-molecule-based fragments ('amons') with active learning.
  • Developing transferable quantum machine learning (ML) models, termed AML models.
  • Validating AML models for molecular quantum properties like energies, forces, and charges.

Main Results:

  • Demonstrated efficiency, accuracy, scalability, and transferability of AML models.
  • Successfully applied AML models to diverse systems including organic molecules, 2D materials, DNA base pairs, and proteins.
  • Showcased the ability to reconstruct chemistries from local building blocks, extending Mendeleev's table concept.

Conclusions:

  • The AML approach offers a significant advancement in computational chemistry.
  • This method enables systematic exploration and design of chemical compounds and materials.
  • The approach effectively accounts for chemical environments, facilitating the reconstruction of complex chemistries.