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Updated: Dec 9, 2025

Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools
Published on: August 19, 2025
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets
Meena Choi1, Jeremy Carver2, Cristina Chiva3,4
1Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA.
Abstract:
MassIVE.quant is a repository infrastructure and data resource for reproducible quantitative mass spectrometry-based proteomics, which is compatible with all mass spectrometry data acquisition types and computational analysis tools. A branch structure enables MassIVE.quant to systematically store raw experimental data, metadata of the experimental design, scripts of the quantitative analysis workflow, intermediate input and output files, as well as alternative reanalyses of the same dataset.
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