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Anaerobic fixed-target serial crystallography.

Patrick Rabe1, John H Beale2, Agata Butryn2

  • 1Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom.

Iucrj
|September 17, 2020
PubMed
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This summary is machine-generated.

This study introduces a new method for room-temperature X-ray diffraction data collection of oxygen-sensitive enzymes. The technique preserves anaerobic conditions, enabling studies on crucial enzymes like VioC, AlkB, and IPNS.

Area of Science:

  • Biochemistry
  • Structural Biology
  • Crystallography

Background:

  • Cryo-X-ray diffraction is standard for oxygen-sensitive enzymes, but limits reactivity.
  • Room-temperature serial methods offer advantages but lack anaerobic conditions for dependent enzymes.
  • Previous methods have not explored maintaining anaerobic environments for room-temperature serial data collection at synchrotrons.

Purpose of the Study:

  • To develop and validate a methodology for room-temperature serial X-ray diffraction data collection of anaerobic samples.
  • To enable studies on oxygen-dependent enzymes that are sensitive to X-ray radiation.
  • To adapt existing sample mounting techniques for low-dose, room-temperature, anaerobic data collection.

Main Methods:

  • Adaptation of the 'sheet-on-sheet' sample mount for anaerobic conditions.
Keywords:
2-oxoglutarate/α-ketoglutarate oxygenasesanaerobic crystallizationoxygen-employing enzymespenicillin biosynthesisserial crystallography

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  • Sample preparation in an anaerobic glovebox with gentle crystal handling.
  • Low-dose, room-temperature serial data collection at synchrotron light sources.
  • Main Results:

    • Successful methodology for preserving localized anaerobic environments (<5 min) during data collection.
    • Demonstrated utility with X-ray radiation-sensitive Fe(II)-containing enzymes: VioC, AlkB, and isopenicillin N synthase (IPNS).
    • Method shows low sample consumption and easy preparation.

    Conclusions:

    • The developed method facilitates room-temperature serial X-ray diffraction of anaerobic, oxygen-sensitive enzymes.
    • This technique expands the scope of synchrotron-based crystallographic studies for critical enzyme classes.
    • Enables structural insights into enzymes involved in DNA repair and antibiotic biosynthesis.