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Published on: May 30, 2025
LncRNA regulation: New frontiers in epigenetic solutions to drug chemoresistance
Ying Zhou1, Wen Sun1, Zhiyuan Qin1
1Institute of Drug Metabolism and Pharmaceutical Analysis, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, China.
Abstract:
Long-noncoding RNAs (lncRNAs) have been shown to participate in sensitizing or de-sensitizing cancer cells to chemical drugs during cancer therapeutics. Notably, a plethora of lncRNAs have been confirmed to be associated with epigenetic controllers and regulate histone protein modification or DNA methylation states in the process of gene transcription. This correlation between lncRNAs and epigenetic regulators can induce the expression of core genes to trigger drug resistance. In addition, epigenetic signatures are considered to be effective and attractive biomarkers for monitoring drug therapeutic effects because they are inheritable, dynamic, and reversible. Therefore, the regulatory mechanism between lncRNAs and epigenetic machinery can serve as a novel indicator and target to overcome or reverse drug resistance in cancer therapy. In this review, we also presented a curated selection of computational tools (including online databases and network analysis) in the area of epigenetics. A classic workflow for lncRNA expression network analysis is presented, providing guidance for non-bioinformaticians to identify significant correlation between lncRNAs and other biomolecules.
Insights
Long non-coding RNAs (lncRNAs) interact with epigenetic regulators to influence cancer drug resistance. Understanding these interactions offers new targets to reverse resistance and improve cancer therapy outcomes.
Area of Science:
- Epigenetics
- Molecular Biology
- Cancer Therapeutics
Background:
- Long non-coding RNAs (lncRNAs) modulate cancer cell sensitivity to chemotherapy.
- lncRNAs are linked to epigenetic regulators, influencing gene transcription via histone modification and DNA methylation.
- This lncRNA-epigenetic interplay can drive cancer drug resistance.
Purpose of the Study:
- To review the role of lncRNAs in cancer drug resistance.
- To highlight epigenetic signatures as biomarkers for therapeutic monitoring.
- To explore lncRNA-epigenetic mechanisms as targets for overcoming drug resistance.
Main Methods:
- Literature review of lncRNA and epigenetics in cancer drug resistance.
- Discussion of epigenetic mechanisms (histone modification, DNA methylation).
- Presentation of computational tools and network analysis for lncRNA expression.
Main Results:
- lncRNAs associated with epigenetic controllers can induce drug resistance by regulating core genes.
- Epigenetic signatures are dynamic, inheritable, and reversible biomarkers.
- Computational tools aid in identifying correlations between lncRNAs and biomolecules.
Conclusions:
- The lncRNA-epigenetic machinery interaction is a promising target to reverse cancer drug resistance.
- lncRNA network analysis provides a framework for identifying therapeutic targets.
- Epigenetic biomarkers offer insights into treatment efficacy.
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