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Updated: Dec 7, 2025

Isolation of Macrophage Subsets and Stromal Cells from Human and Mouse Myocardial Specimens
Published on: December 17, 2019
The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by
David M Calcagno1, Richard P Ng2, Avinash Toomu2
1Department of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.
Abstract:
Sterile tissue injury is thought to locally activate innate immune responses via damage-associated molecular patterns (DAMPs). Whether innate immune pathways are remotely activated remains relatively unexplored. Here, by analyzing ~145,000 single-cell transcriptomes at steady state and after myocardial infarction (MI) in mice and humans, we show that the type I interferon (IFN) response, characterized by expression of IFN-stimulated genes (ISGs), begins far from the site of injury, in neutrophil and monocyte progenitors within the bone marrow. In the peripheral blood of patients, we observed defined subsets of ISG-expressing neutrophils and monocytes. In the bone marrow and blood of mice, ISG expression was detected in neutrophils and monocytes and their progenitors, intensified with maturation at steady-state and after MI, and was controlled by Tet2 and Irf3 transcriptional regulators. Within the infarcted heart, ISG-expressing cells were negatively regulated by Nrf2 activation in Ccr2- steady-state cardiac macrophages. Our results show that IFN signaling begins in the bone marrow, implicate multiple transcriptional regulators (Tet2, Irf3, and Nrf2) in governing ISG expression, and provide a clinical biomarker (ISG score) for studying IFN signaling in patients.
Insights
Remote innate immune activation occurs in the bone marrow following sterile tissue injury. Type I interferon responses begin in immune cell progenitors, offering a potential biomarker for patient studies.
Area of Science:
- Immunology
- Hematopoiesis
- Cardiovascular Biology
Background:
- Sterile tissue injury typically triggers local innate immune responses via damage-associated molecular patterns (DAMPs).
- Remote immune pathway activation following injury remains largely uncharacterized.
Purpose of the Study:
- To investigate remote innate immune activation after sterile tissue injury, specifically focusing on type I interferon (IFN) responses.
- To identify the cellular and molecular mechanisms governing IFN signaling in distant tissues.
Main Methods:
- Analysis of approximately 145,000 single-cell transcriptomes from mouse and human samples at steady state and post-myocardial infarction (MI).
- Identification and characterization of IFN-stimulated gene (ISG) expression in immune cell populations and progenitors.
- Investigation of transcriptional regulators (Tet2, Irf3, Nrf2) controlling ISG expression.
Main Results:
- Type I IFN response, marked by ISG expression, originates in bone marrow neutrophil and monocyte progenitors, distant from the injury site.
- ISG expression is present in distinct neutrophil and monocyte subsets in human peripheral blood.
- ISG expression in mouse bone marrow and blood cells intensifies with maturation and post-MI, regulated by Tet2 and Irf3.
- Nrf2 activation in cardiac macrophages negatively regulates ISG-expressing cells within the infarcted heart.
Conclusions:
- Innate immune signaling, specifically type I IFN response, is initiated remotely in the bone marrow following sterile tissue injury.
- Tet2, Irf3, and Nrf2 are key transcriptional regulators of ISG expression in this context.
- An 'ISG score' derived from ISG expression serves as a potential clinical biomarker for studying IFN signaling in patients.
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