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Dynamic Visualization and Fast Computation for Convex Clustering via Algorithmic Regularization.

Michael Weylandt1, John Nagorski1, Genevera I Allen1,2,3,4

  • 1Department of Statistics, Rice University.

Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America
|September 28, 2020
PubMed
Summary
This summary is machine-generated.

Algorithmic Regularization speeds up convex clustering (CC) by over 100x, enabling better visualizations. This computational clustering method offers a novel approach to analyzing complex data in genomics and text analysis.

Keywords:
Algorithmic RegularizationClusteringConvex ClusteringDendrogramsOptimizationVisualization

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Area of Science:

  • Computational statistics
  • Data mining
  • Machine learning

Background:

  • Convex clustering offers theoretical advantages but faces adoption barriers due to computational intensity and poor visualization.
  • Existing methods for convex clustering are computationally expensive and limit the granularity of solutions.

Purpose of the Study:

  • To introduce Algorithmic Regularization for efficient convex clustering path estimation.
  • To develop the Convex Clustering via Algorithmic Regularization Paths (CARP) algorithm.
  • To enhance the visualization capabilities of convex clustering solutions.

Main Methods:

  • Algorithmic Regularization: An iterative one-step approximation scheme for estimating regularization paths.
  • Global convergence guarantee for the approximate path under specific assumptions.
  • CARP algorithm implementation for computing the full clustering solution path.

Main Results:

  • CARP achieves over a 100-fold speed-up compared to existing convex clustering methods.
  • The algorithm provides a finer approximation grid, enabling more detailed analysis.
  • Enhanced visualization through convex clustering-based dendrograms and dynamic path-wise plots.

Conclusions:

  • Algorithmic Regularization effectively addresses the computational and visualization limitations of convex clustering.
  • CARP offers a significant performance improvement and richer visualization options for complex datasets.
  • The open-source R package clustRviz facilitates the application of these advanced convex clustering techniques.