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Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
Dual specificity phosphatase 9: A novel binding partner cum substrate of proapoptotic serine protease HtrA2
Saujanya Acharya1, Shubhankar Dutta2, Snehal Pandav Mudrale2
1Advanced Centre for Treatment, Research and Education in Cancer (ACTREC), Tata Memorial Centre, Kharghar, Navi Mumbai, 410210, India; Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai, 400094, India.
Abstract:
Human high temperature requirement protease A2 (HtrA2) is a trimeric PDZ bearing proapoptotic serine protease, which is involved in various cellular processes and pathologies. Research in the last decade strongly advocates its role as a potential therapeutic target and therefore warrants the need to minutely investigate its mechanism of action, regulation, interactions with other proteins and its binding specificities. In this particular study, we adopted an in silico approach to predict novel interacting partners and/or substrates of HtrA2 by building a peptide library using a binding pattern search. This library was used to look for novel ligand proteins in the human proteome. Thereafter, the putative interaction was validated using biochemical and cell-based studies. In a first, here we report that HtrA2 shows robust interactions with DUSP9 (Dual specificity phosphatase 9) in GST-pulldown and Co-Immunoprecipitation (Co-IP) experiments and cleaves it in vitro. Besides, we also provided a detailed characterization of the interaction interface. Moreover, this study in general provides an efficient, fast and practical method of candidate ligand library screening for exploring the binding properties of HtrA2.
Insights
Human high-temperature requirement protease A2 (HtrA2) interacts with and cleaves DUSP9. This study identifies new HtrA2 binding partners and provides an efficient screening method for its interactions.
Area of Science:
- Biochemistry
- Molecular Biology
- Protease Function
Background:
- Human high-temperature requirement protease A2 (HtrA2) is a serine protease implicated in cellular processes and diseases.
- Its role as a therapeutic target necessitates understanding its interactions and binding specificities.
Purpose of the Study:
- To identify novel interacting partners and substrates of HtrA2 using an in silico approach.
- To validate predicted interactions through biochemical and cell-based assays.
- To characterize the interaction interface between HtrA2 and its novel partners.
Main Methods:
- In silico peptide library construction and binding pattern search.
- GST-pulldown and Co-Immunoprecipitation (Co-IP) assays for interaction validation.
- In vitro cleavage assays and interaction interface characterization.
Main Results:
- HtrA2 robustly interacts with Dual Specificity Phosphatase 9 (DUSP9).
- HtrA2 demonstrates in vitro cleavage activity towards DUSP9.
- Detailed characterization of the HtrA2-DUSP9 interaction interface was achieved.
Conclusions:
- HtrA2 interacts with and cleaves DUSP9, identifying DUSP9 as a novel binding partner and substrate.
- The study presents an efficient method for screening HtrA2 ligand libraries.
- Findings contribute to understanding HtrA2's mechanism of action and therapeutic potential.
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