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Engineering enzyme specificity by "substrate-assisted catalysis".

P Carter, J A Wells

    Science (New York, N.Y.)
    |July 24, 1987
    PubMed
    Summary
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    Researchers engineered enzyme specificity by removing a catalytic group and restoring activity with a modified substrate. This "substrate-assisted catalysis" offers a new method for creating highly specific enzymes.

    Area of Science:

    • Biochemistry
    • Enzyme Engineering
    • Molecular Biology

    Background:

    • Enzyme specificity is crucial for biological functions.
    • Engineering enzyme specificity is a significant challenge in biotechnology.
    • Site-directed mutagenesis is a common tool for enzyme modification.

    Purpose of the Study:

    • To develop a novel approach for engineering enzyme specificity.
    • To investigate the concept of "substrate-assisted catalysis".

    Main Methods:

    • Site-directed mutagenesis was used to replace catalytic Histidine (His) with Alanine (Ala) in Bacillus amyloliquefaciens subtilisin (His64Ala mutant).
    • Enzyme activity was assayed using various substrates, including N-succinyl-L-Phe-L-Ala-L-Ala-L-Phe-p-nitroanilide (sFAAF-pNA), N-succinyl-L-Phe-L-His-L-Ala-L-Phe-p-nitroanilide (sFAHF-pNA), and N-succinyl-L-Phe-L-Gln-L-Ala-L-Phe-p-nitroanilide (sFAQF-pNA).

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  • Substrate-dependent pH profiles and hydrolysis of large polypeptides were analyzed.
  • Main Results:

    • The His64Ala mutant showed a million-fold decrease in catalytic efficiency with sFAAF-pNA compared to wild-type subtilisin.
    • The His64Ala mutant hydrolyzed a His P2 substrate (sFAHF-pNA) up to 400 times faster than Ala P2 or Gln P2 substrates.
    • Wild-type subtilisin hydrolyzed these three substrates with similar catalytic efficiencies.
    • The His64Ala mutant demonstrated partial recovery of function by utilizing the substrate's histidine side chain.

    Conclusions:

    • "Substrate-assisted catalysis" is a viable strategy for engineering narrow and useful enzyme specificities.
    • This approach provides a new basis for enzyme design and modification.
    • The findings suggest a potential evolutionary intermediate for the catalytic triad of serine proteases.