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Updated: Dec 7, 2025

Generation of a RIP1 Knockout U937 Cell Line Using the CRISPR-Cas9 System
Published on: April 11, 2025
Impaired RIPK1 ubiquitination sensitizes mice to TNF toxicity and inflammatory cell death
Matthias Kist1, László G Kőműves2, Tatiana Goncharov1
1Departments of Early Discovery Biochemistry, Genentech, 1 DNA Way, South San Francisco, CA, 94080, USA.
Abstract:
Receptor-interacting protein 1 (RIP1; RIPK1) is a key regulator of multiple signaling pathways that mediate inflammatory responses and cell death. TNF-TNFR1 triggered signaling complex formation, subsequent NF-κB and MAPK activation and induction of cell death involve RIPK1 ubiquitination at several lysine residues including Lys376 and Lys115. Here we show that mutating the ubiquitination site K376 of RIPK1 (K376R) in mice activates cell death resulting in embryonic lethality. In contrast to Ripk1K376R/K376R mice, Ripk1K115R/K115R mice reached adulthood and showed slightly higher responsiveness to TNF-induced death. Cell death observed in Ripk1K376R/K376R embryos relied on RIPK1 kinase activity as administration of RIPK1 inhibitor GNE684 to pregnant heterozygous mice effectively blocked cell death and prolonged survival. Embryonic lethality of Ripk1K376R/K376R mice was prevented by the loss of TNFR1, or by simultaneous deletion of caspase-8 and RIPK3. Interestingly, elimination of the wild-type allele from adult Ripk1K376R/cko mice was tolerated. However, adult Ripk1K376R/cko mice were exquisitely sensitive to TNF-induced hypothermia and associated lethality. Absence of the K376 ubiquitination site diminished K11-linked, K63-linked, and linear ubiquitination of RIPK1, and promoted the assembly of death-inducing cellular complexes, suggesting that multiple ubiquitin linkages contribute to the stability of the RIPK1 signaling complex that stimulates NF-κB and MAPK activation. In contrast, mutating K115 did not affect RIPK1 ubiquitination or TNF stimulated NF-κB and MAPK signaling. Overall, our data indicate that selective impairment of RIPK1 ubiquitination can lower the threshold for RIPK1 activation by TNF resulting in cell death and embryonic lethality.
Insights
Impairing Receptor-interacting protein 1 (RIPK1) ubiquitination at K376 causes embryonic lethality in mice by promoting RIPK1 kinase activity and cell death. This highlights RIPK1 ubiquitination
Area of Science:
- Cellular and Molecular Biology
- Immunology
- Genetics
Background:
- Receptor-interacting protein 1 (RIPK1) is crucial for inflammatory signaling and cell death pathways.
- RIPK1 ubiquitination regulates TNF-TNFR1 signaling, NF-κB, and MAPK activation.
- Specific lysine residues, including K376 and K115, are key sites for RIPK1 ubiquitination.
Purpose of the Study:
- To investigate the functional role of RIPK1 ubiquitination at K376 and K115 in vivo.
- To determine the impact of impaired RIPK1 ubiquitination on TNF-induced signaling and cell death.
- To elucidate the mechanisms underlying RIPK1-mediated embryonic lethality.
Main Methods:
- Generation and analysis of RIPK1 K376R and K115R mutant mice.
- Administration of RIPK1 inhibitor GNE684 during pregnancy.
- Genetic deletion of TNFR1, caspase-8, and RIPK3 in RIPK1 mutant mice.
- Assessment of TNF-induced hypothermia and lethality in adult mice.
- Analysis of RIPK1 ubiquitination status and signaling complex assembly.
Main Results:
- Mutation of RIPK1 K376 to arginine (K376R) in mice leads to embryonic lethality due to RIPK1 kinase-dependent cell death.
- RIPK1 K376R mutation diminishes various RIPK1 ubiquitination linkages and promotes death-inducing complex assembly.
- Embryonic lethality in Ripk1K376R/K376R mice is rescued by TNFR1 loss or combined caspase-8/RIPK3 deletion.
- Adult Ripk1K376R/cko mice are highly sensitive to TNF-induced lethality.
- Mutation at K115 (K115R) did not significantly affect RIPK1 ubiquitination or TNF signaling.
Conclusions:
- Selective impairment of RIPK1 ubiquitination at K376 lowers the threshold for RIPK1 activation by TNF.
- This dysregulation results in excessive cell death and embryonic lethality.
- RIPK1 ubiquitination is critical for maintaining the stability of signaling complexes that activate NF-κB and MAPK pathways.
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