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Updated: Dec 6, 2025

Deep Learning-Based Segmentation of Cryo-Electron Tomograms
Published on: November 11, 2022
Deep learning for scanning electron microscopy: Synthetic data for the nanoparticles detection
1National Research Nuclear University "MEPhI", 115409 Moscow, Russia.
Abstract:
Deep learning algorithms are one of most rapid developing fields into the modern computation technologies. One of the bottlenecks into the implementation of such advaced algorithms is their requirement for a large amount of manually-labelled data for training. For the general-purpose tasks, such as general purpose image classification/detection the huge images datasets are already labelled and collected. For more subject specific tasks (such as electron microscopy images treatment), no labelled data available. Here I demonstrate that a deep learning network can be successfully trained for nanoparticles detection using semi-synthetic data. The real SEM images were used as a textures for rendered nanoparticles at the surface. Training of RetinaNet architecture using transfer learning can be helpful for the large-scale particle distribution analysis. Beyond such applications, the presented approach might be applicable to other tasks, such as image segmentation.
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