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Published on: April 2, 2013
Functional characterization of the HMP-P synthase of Legionella pneumophila (Lpg1565)
Michael D Paxhia1, Michele S Swanson2, Diana M Downs1
1Department of Microbiology, University of Georgia, Athens, GA, USA.
Abstract:
The production of the pyrimidine moiety in thiamine synthesis, 2-methyl-4-amino-5-hydroxymethylpyrimidine phosphate (HMP-P), has been described to proceed through the Thi5-dependent pathway in Saccharomyces cerevisiae and other yeast. Previous work found that ScThi5 functioned poorly in a heterologous context. Here we report a bacterial ortholog to the yeast HMP-P synthase (Thi5) was necessary for HMP synthesis in Legionella pneumophila. Unlike ScThi5, LpThi5 functioned in vivo in Salmonella enterica under multiple growth conditions. The protein LpThi5 is a dimer that binds pyridoxal-5'-phosphate (PLP), apparently without a solvent-exposed Schiff base. A small percentage of LpThi5 protein co-purifies with a bound molecule that can be converted to HMP. Analysis of variant proteins both in vivo and in vitro confirmed that residues in sequence motifs conserved across bacterial and eukaryotic orthologs modulate the function of LpThi5. IMPORTANCE: Thiamine is an essential vitamin for the vast majority of organisms. There are multiple strategies to synthesize and salvage this vitamin. The predominant pathway for synthesis of the pyrimidine moiety of thiamine involves the Fe-S cluster protein ThiC. An alternative pathway utilizes Thi5, a novel enzyme that uses PLP as a substrate. The Thi5-dependent pathway is poorly characterized in yeast and has not been characterized in Bacteria. Here we demonstrate that a Thi5-dependent pathway is necessary for thiamine biosynthesis in Legionella pneumophila and provide biochemical data to extend knowledge of the Thi5 enzyme, the corresponding biosynthetic pathway, and the role of metabolic network architecture in optimizing its function.
Insights
A bacterial enzyme, LpThi5, is essential for synthesizing the pyrimidine part of thiamine (vitamin B1) in Legionella pneumophila. This enzyme functions effectively in other bacteria, unlike its yeast counterpart, advancing our understanding of thiamine biosynthesis pathways.
Area of Science:
- Microbiology and Molecular Biology
- Biochemistry and Metabolic Pathways
Background:
- Thiamine (vitamin B1) is vital for most organisms, with diverse synthesis and salvage strategies.
- The pyrimidine moiety of thiamine is typically synthesized via the ThiC pathway, but an alternative Thi5-dependent route exists.
- The Thi5-dependent pathway is poorly understood, especially in bacteria, and the yeast ortholog (ScThi5) shows limited function in heterologous systems.
Purpose of the Study:
- To investigate the role of a bacterial Thi5 ortholog in thiamine biosynthesis in Legionella pneumophila.
- To characterize the biochemical properties and functional capabilities of the bacterial HMP-P synthase (LpThi5).
- To compare the function of bacterial LpThi5 with its yeast counterpart (ScThi5) in heterologous systems.
Main Methods:
- Identified and characterized a bacterial ortholog of HMP-P synthase (Thi5) in Legionella pneumophila (LpThi5).
- Assessed the in vivo function of LpThi5 in Salmonella enterica under various growth conditions.
- Performed in vitro biochemical analyses of purified LpThi5, including substrate binding and analysis of variant proteins.
Main Results:
- A bacterial Thi5 ortholog (LpThi5) is essential for HMP-P synthesis in Legionella pneumophila.
- LpThi5 functions effectively in vivo in Salmonella enterica, contrasting with the poor performance of ScThi5.
- LpThi5 is a dimer that binds pyridoxal-5'-phosphate (PLP) and conserved residues modulate its enzymatic activity.
Conclusions:
- The Thi5-dependent pathway is a necessary route for thiamine biosynthesis in Legionella pneumophila.
- Bacterial LpThi5 represents a functional and biochemically characterized HMP-P synthase, expanding knowledge of this alternative pathway.
- Understanding LpThi5 function provides insights into metabolic network architecture and enzyme optimization in thiamine synthesis.
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