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Related Concept Videos

Alternative RNA Splicing02:18

Alternative RNA Splicing

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Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
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Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
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Translation01:31

Translation

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Lesson: Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
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Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
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The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
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Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
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Detection of Alternative Splicing During Epithelial-Mesenchymal Transition
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Spliceosomal factor mutations and mis-splicing in MDS.

Courtney E Hershberger1, Noah J Daniels1, Richard A Padgett1

  • 1Department of Molecular Medicine, Cleveland Clinic College of Medicine of Case Western Reserve University, Cleveland, OH, USA.

Best Practice & Research. Clinical Haematology
|October 11, 2020
PubMed
Summary

Mutations in spliceosome proteins are common in myelodysplastic syndromes (MDS). These genetic alterations disrupt gene splicing, leading to characteristic changes in gene expression and potentially disease development.

Keywords:
Alternative splicingMyelodysplastic syndromeRNA splicingSpliceosome

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Area of Science:

  • Genetics
  • Molecular Biology
  • Hematology

Background:

  • Somatic mutations in spliceosome proteins occur frequently in myelodysplastic syndromes (MDS).
  • These mutations affect proteins involved in various stages of RNA splicing.
  • The precise impact of these mutations on the splicing landscape and disease pathogenesis is under investigation.

Purpose of the Study:

  • To summarize the normal functions of spliceosome proteins implicated in MDS.
  • To elucidate how mutations alter genome-wide splicing patterns.
  • To identify commonly mis-spliced gene targets and discuss mechanistic links to MDS.

Main Methods:

  • Review of existing literature on spliceosome mutations in MDS.
  • Analysis of the functional consequences of these mutations on alternative splicing.
  • Identification and summary of frequently mis-spliced genes.

Main Results:

  • Mutations in at least seven spliceosome proteins are highly prevalent in MDS.
  • These mutations lead to characteristic alterations in alternative splicing of specific genes.
  • Commonly mis-spliced gene targets have been identified, suggesting shared downstream effects.

Conclusions:

  • Spliceosome mutations represent a key molecular event in MDS pathogenesis.
  • Understanding these splicing alterations is crucial for elucidating disease mechanisms.
  • Alternative mechanisms contributing to MDS development due to these mutations warrant further investigation.