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Murine Precision-Cut Liver Slices as an Ex Vivo Model of Liver Biology
Published on: March 14, 2020
Chemokine CXCL14 acts as a potential genetic target for liver fibrosis
Sheng Wang1, Chen Shuai2, Songsen Gao3
1Department of Pharmacy, The First Affiliated Hospital of Wannan Medical College (Yijishan Hospital of Wannan Medical College), Wuhu, Anhui Province, China; The Key Laboratory of Anti-inflammatory and Immune Medicines, Ministry of Education, Anhui Province Key Laboratory of Major Autoimmune Diseases, School of Pharmacy, Institute for Liver Disease of Anhui Medical University, Hefei, Anhui Province, China.
Abstract:
There are multiple causes of liver fibrosis, common ones include ethanol, toxins, and cholestasis. However, whether these different etiologies lead to the same pathological outcomes contain common genetic targets or signaling pathways, the current research has not attracted widespread attention. GSE40041 and GSE55747 were downloaded from the Gene Expression Omnibus (GEO) database. GSE40041 and GSE55747 represent the differential expression profiles in the liver of mice with bile duct ligation (BDL) and carbon tetrachloride (CCl4) induced liver fibrosis models, respectively. By using GEO2R, 701 differential expression genes (DEGs) in GSE40041 and 6540 DEGs in GSE55747 were identified. 260 co-DEGs were shared and extracted for gene ontology (GO) analysis. Through GO analysis, it was found that the regulation of cell migration in biological processes (BPs) was closely related to the pathogenesis of liver fibrosis, and the genes involved in this process include a key gene, chemokine (C-X-C motif) ligand 14 (CXCL14). Subsequently, further bioinformatic analysis showed that CXCL14 may be regulated by miR-122 to participate in the progression of liver fibrosis. Then real-time PCR and western blotting were performed to validate the expression of CXCL14 in liver tissue after liver fibrosis caused by different etiologies (ethanol, CCl4). The expression of CXCL4 in liver fibrosis induced by BDL was verified in another GEO dataset. Basically consistent with our bioinformatics results, our experimental results showed that the expression of CXCL14 was most significantly increased in alcoholic liver fibrosis model, followed by CCl4-induced liver fibrosis, which was also significantly increased in the BDL-induced model. Thus, CXCL14 can act as a common potential genetic target for different liver fibrosis diseases.
Insights
This study identifies chemokine (C-X-C motif) ligand 14 (CXCL14) as a common genetic target across different liver fibrosis causes. CXCL14
Area of Science:
- Hepatology and Molecular Biology
- Bioinformatics and Genomics
Background:
- Liver fibrosis has diverse causes, including ethanol, toxins, and cholestasis.
- Common molecular mechanisms and genetic targets across these etiologies remain under-explored.
Purpose of the Study:
- To identify common genetic targets and pathways in liver fibrosis regardless of etiology.
- To investigate the role of chemokine (C-X-C motif) ligand 14 (CXCL14) in liver fibrosis pathogenesis.
Main Methods:
- Downloaded and analyzed gene expression data from GEO datasets (GSE40041, GSE55747) for bile duct ligation (BDL) and carbon tetrachloride (CCl4) induced liver fibrosis models.
- Utilized GEO2R for differential gene expression analysis and Gene Ontology (GO) analysis to identify shared genes and pathways.
- Validated CXCL14 expression using real-time PCR and western blotting in various liver fibrosis models (ethanol, CCl4, BDL).
Main Results:
- Identified 260 co-expressed differentially expressed genes (co-DEGs) between BDL and CCl4 models.
- GO analysis highlighted the regulation of cell migration as a key biological process, implicating CXCL14.
- CXCL14 expression was significantly elevated in alcoholic, CCl4-induced, and BDL-induced liver fibrosis models, with the highest increase in the alcoholic model.
Conclusions:
- CXCL14 is a potential common genetic target for diverse liver fibrosis etiologies.
- CXCL14, potentially regulated by miR-122, plays a significant role in liver fibrosis progression.
- This finding offers a unified perspective on liver fibrosis pathogenesis and potential therapeutic strategies.
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