Related Experiment Video
Updated: Dec 6, 2025

Application of Granger Causality Analysis of the Directed Functional Connection in Alzheimer's Disease and Mild Cognitive Impairment
Published on: August 7, 2017
How directed is a directed network?
R S MacKay1,2, S Johnson3,2, B Sansom4
1Mathematics Institute and Centre for Complexity Science, University of Warwick, Coventry, UK.
We present new methods for calculating trophic levels and coherence in any directed network, improving upon ecological definitions. This approach reveals node functions and network properties across diverse systems.
Area of Science:
- Network Science
- Systems Biology
- Ecology
Background:
- Trophic levels and coherence in directed networks offer insights into functional properties and network stability.
- Existing ecological definitions of trophic levels have limitations, restricting their application to networks with specific structures (e.g., basal nodes).
Purpose of the Study:
- To propose novel, broadly applicable definitions for trophic levels and coherence in directed networks.
- To demonstrate the utility of these new definitions in identifying node functions across various network types.
- To explore the relationship between these network properties and other topological characteristics.
Main Methods:
- Development of generalized definitions for node trophic levels and network trophic coherence.
- Application of the proposed method to diverse directed networks, including ecological, supply chain, gene expression, and language networks.
- Analysis of the correlation between trophic levels/coherence and other network topological features, such as non-normality and cycle structure.
Main Results:
- The proposed method successfully computes trophic levels and coherence for any directed network, overcoming limitations of previous approaches.
- Node functions were effectively identified in diverse network examples using the new definitions.
- The study revealed the degree of global directional alignment within network edges.
Conclusions:
- The generalized definitions of trophic levels and coherence provide a versatile tool for analyzing directed networks.
- This framework enhances understanding of network structure, function, and stability across scientific domains.
- The method offers a new perspective on the directional organization of complex systems.
More Related Videos
10:44Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline
Published on: December 7, 2021
10:50Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening
Published on: April 1, 2016
Related Concept Videos
Directing Effect of Substituents: meta-Directing Groups
Directing Effect of Substituents: ortho–para-Directing Groups
Protein Networks
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
Protein Networks
Directing Proteins to the Rough Endoplasmic Reticulum
Directional Relays