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Updated: Dec 6, 2025

Quadruple-Checkerboard: A Modification of the Three-Dimensional Checkerboard for Studying Drug Combinations
Published on: July 24, 2021
Competition delays multi-drug resistance evolution during combination therapy
Ernesto Berríos-Caro1, Danna R Gifford2, Tobias Galla3
1Theoretical Physics, Department of Physics and Astronomy, School of Natural Sciences, Faculty of Science and Engineering, The University of Manchester, Manchester M13 9PL, United Kingdom.
Abstract:
Combination therapies have shown remarkable success in preventing the evolution of resistance to multiple drugs, including HIV, tuberculosis, and cancer. Nevertheless, the rise in drug resistance still remains an important challenge. The capability to accurately predict the emergence of resistance, either to one or multiple drugs, may help to improve treatment options. Existing theoretical approaches often focus on exponential growth laws, which may not be realistic when scarce resources and competition limit growth. In this work, we study the emergence of single and double drug resistance in a model of combination therapy of two drugs. The model describes a sensitive strain, two types of single-resistant strains, and a double-resistant strain. We compare the probability that resistance emerges for three growth laws: exponential growth, logistic growth without competition between strains, and logistic growth with competition between strains. Using mathematical estimates and numerical simulations, we show that between-strain competition only affects the emergence of single resistance when resources are scarce. In contrast, the probability of double resistance is affected by between-strain competition over a wider space of resource availability. This indicates that competition between different resistant strains may be pertinent to identifying strategies for suppressing drug resistance, and that exponential models may overestimate the emergence of resistance to multiple drugs. A by-product of our work is an efficient strategy to evaluate probabilities of single and double resistance in models with multiple sequential mutations. This may be useful for a range of other problems in which the probability of resistance is of interest.
Insights
Predicting drug resistance is key to improving treatments. This study shows that competition between resistant strains significantly impacts double drug resistance, unlike simpler models, offering new strategies to suppress resistance.
Area of Science:
- Mathematical Biology
- Evolutionary Biology
- Pharmacology
Background:
- Combination therapies are vital for treating infectious diseases and cancer, yet drug resistance remains a significant challenge.
- Accurate prediction of drug resistance emergence is crucial for optimizing treatment strategies.
- Current theoretical models often use exponential growth, which may not reflect real-world scenarios with limited resources and competition.
Purpose of the Study:
- To investigate the emergence of single and double drug resistance under different growth models.
- To compare the impact of exponential vs. logistic growth with and without inter-strain competition on resistance evolution.
- To determine how resource availability and competition influence the probability of developing resistance to one or multiple drugs.
Main Methods:
- Development of a mathematical model including sensitive, single-resistant, and double-resistant strains.
- Comparison of resistance emergence probabilities using three growth laws: exponential, logistic without competition, and logistic with competition.
- Utilizing mathematical estimations and numerical simulations to analyze model outcomes.
Main Results:
- Inter-strain competition affects single drug resistance emergence primarily under scarce resource conditions.
- Competition significantly influences double drug resistance emergence across a broader range of resource availabilities.
- Logistic growth models with competition provide a more nuanced understanding of resistance evolution compared to exponential models.
Conclusions:
- Competition between resistant strains is a critical factor in suppressing multi-drug resistance.
- Exponential growth models may overestimate the likelihood of multiple drug resistance.
- The study offers an efficient method for evaluating resistance probabilities in models with sequential mutations, applicable to various resistance research areas.
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