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Updated: Dec 5, 2025

Evidence-based Knowledge Synthesis and Hypothesis Validation: Navigating Biomedical Knowledge Bases via Explainable AI and Agentic Systems
Published on: June 13, 2025
Explainable and trustworthy artificial intelligence for correctable modeling in chemical sciences
Jinchao Feng1, Joshua L Lansford2, Markos A Katsoulakis3
1Department of Applied Mathematics and Statistics, Johns Hopkins University, Baltimore, MD 21218, USA.
This study introduces a new framework combining artificial intelligence (AI) and uncertainty quantification for predictive modeling with small, noisy datasets. It enables trustworthy, explainable AI models by integrating expert knowledge and physics-based approaches.
Area of Science:
- Multidisciplinary research at the intersection of data science, physics, chemistry, and engineering.
- Development of advanced computational and mathematical frameworks for scientific modeling.
Background:
- Traditional data science and machine learning methods are inadequate for small, correlated, and noisy datasets common in physics, chemistry, and engineering.
- Existing approaches lack systematic frameworks for integrating expert knowledge into physics-based models under uncertainty.
Purpose of the Study:
- To develop a mathematical and computational framework for probabilistic artificial intelligence (AI)-based predictive modeling.
- To combine data, expert knowledge, multiscale models, and information theory using uncertainty quantification and probabilistic graphical models (PGMs).
- To provide predictive guarantees for PGMs and demonstrate their application in chemistry.
Main Methods:
- Development of a novel framework integrating AI, uncertainty quantification, and probabilistic graphical models (PGMs).
- Incorporation of expert knowledge, multiscale models, and information theory.
- Application of the framework to a microkinetic model of the oxygen reduction reaction.
Main Results:
- A demonstrated framework for probabilistic AI-based predictive modeling applicable to small, correlated datasets.
- Development of predictive guarantees for probabilistic graphical models (PGMs).
- Successful application to a specific chemical reaction (oxygen reduction reaction).
Conclusions:
- The proposed framework offers explainable results, leading to correctable and trustworthy AI models.
- This approach effectively combines diverse information sources (data, expert knowledge, physics-based models) for enhanced predictive power.
- The framework addresses critical limitations of current methods in scientific data analysis and modeling.
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