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Following the Dynamics of Structural Variants in Experimentally Evolved Populations
Published on: February 3, 2023
A review of UMAP in population genetics
Alex Diaz-Papkovich1,2, Luke Anderson-Trocmé2, Simon Gravel3
1Quantitative Life Sciences Program, McGill University, Montreal, QC, Canada.
Abstract:
Uniform manifold approximation and projection (UMAP) has been rapidly adopted by the population genetics community to study population structure. It has become common in visualizing the ancestral composition of human genetic datasets, as well as searching for unique clusters of data, and for identifying geographic patterns. Here we give an overview of applications of UMAP in population genetics, provide recommendations for best practices, and offer insights on optimal uses for the technique.
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