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Identification of Circular RNAs using RNA Sequencing
Published on: November 14, 2019
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[Continuous expression and functional prediction of circular RNA in mouse lung development].
Xue Fu1, Yang Yang, Yan-Qing Shen
1Neonatal Medical Center, Children's Hospital Affiliated to Nanjing Medical University, Nanjing 210008, China. xyzhou161@163.com.
Summary
Circular RNAs circ4 and circ15 are expressed during mouse lung development. These circular RNAs may participate in lung development via the Notch signaling pathway.
Area of Science:
- Molecular Biology
- Developmental Biology
- Genomics
Background:
- Circular RNAs (circRNAs) are a novel class of non-coding RNAs with diverse biological functions.
- Understanding the role of circRNAs in organ development is crucial for elucidating complex biological processes.
Purpose of the Study:
- To investigate the expression patterns of two specific circRNAs, circ4:150439343|150477468 and circ15:73330849|73343359, during mouse lung development.
- To predict the potential functions of these circRNAs in lung development.
Main Methods:
- Collected mouse lung tissue at different developmental stages (E16.5, E18.5, P2).
- Performed Hematoxylin and eosin staining to assess lung morphology.
- Utilized quantitative real-time PCR (qRT-PCR) to quantify circRNA expression.
- Employed miRanda and TargetScan for miRNA target prediction, followed by GO and KEGG pathway analysis.
Main Results:
- Observed an increase in Type II alveolar epithelial cells from E16.5 to P2, with mature alveolar structures by P2.
- circ4:150439343|150477468 expression was continuously upregulated, while circ15:73330849|73343359 showed a transient downregulation followed by upregulation.
- Bioinformatic analysis indicated involvement of these circRNAs in Notch, PI3K-Akt, and NF-κB signaling pathways.
Conclusions:
- Circ4:150439343|150477468 and circ15:73330849|73343359 are dynamically expressed during mouse lung development.
- These circRNAs likely play a role in lung development, potentially through the Notch signaling pathway.
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