Related Experiment Video
Updated: Dec 5, 2025

Assessing Hepatic Metabolic Changes During Progressive Colonization of Germ-free Mouse by 1H NMR Spectroscopy
Published on: December 15, 2011
Metabolomic Alteration in the Mouse Distal Colonic Mucosa after Oral Gavage with Oxalobacter formigenes
Casey A Chamberlain1, Marguerite Hatch1, Timothy J Garrett1
1Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL 32610, USA.
Abstract:
Oxalobacter formigenes has been investigated for years due to its proposed ability to produce a secretagogue compound that initiates net intestinal oxalate secretion, thereby theoretically reducing circulating oxalate and risk of kidney stone formation. Strains which have been shown to exhibit this function in vivo across native tissue include the human strain, HC1, and the wild rat strain, OxWR. While previous work on these secretagogue-relevant strains has focused on profiling their metabolome and lipidome in vitro, efforts to characterize their influence on host intestinal mucosal biochemistry in vivo are yet to be reported. Much work has been done over the years with O. formigenes in relation to the secretagogue hypothesis, but it has never been clearly demonstrated that this microorganism is capable of inducing metabolic changes in native host tissue, which would be expected with the production of a transport-inducing compound. In this work, we show how the distal colonic mucosal metabolomic profile in a mouse model exhibited significant changes in the levels of a variety of metabolites as a result of oral gavage with O. formigenes HC1. Among these significant metabolites was nicotinic acid, an essential nutrient shown in past work to be produced in the gut by the native microbiome. Our finding that the in vivo biochemical state of the distal colon was altered with O. formigenes lends support to the secretagogue hypothesis and serves as a pioneering step in characterizing the biochemical interplay between O. formigenes and the mammalian host.
Insights
Oxalobacter formigenes influences gut biochemistry, altering colonic metabolites like nicotinic acid in mice. This supports the secretagogue hypothesis, suggesting a role in reducing kidney stone risk.
Area of Science:
- Microbiology
- Biochemistry
- Gastroenterology
Background:
- Oxalobacter formigenes is hypothesized to reduce kidney stone risk by promoting intestinal oxalate secretion.
- Previous research focused on in vitro metabolomic and lipidomic profiles of O. formigenes strains.
- In vivo studies investigating O. formigenes' impact on host intestinal mucosal biochemistry are limited.
Purpose of the Study:
- To investigate the in vivo effects of O. formigenes HC1 on the distal colonic mucosal metabolome in a mouse model.
- To determine if O. formigenes can induce measurable metabolic changes in host intestinal tissue.
- To provide evidence supporting the secretagogue hypothesis regarding O. formigenes' function.
Main Methods:
- Oral gavage of O. formigenes HC1 in a mouse model.
- Analysis of distal colonic mucosal metabolomic profiles.
- Identification of significant metabolite changes post-gavage.
Main Results:
- Significant alterations in distal colonic mucosal metabolomic profiles were observed after O. formigenes HC1 administration.
- Nicotinic acid was identified as one of the significantly changed metabolites.
- The study demonstrated in vivo metabolic changes in the host colon.
Conclusions:
- The in vivo alteration of the distal colon's biochemical state by O. formigenes lends support to the secretagogue hypothesis.
- This research pioneers the characterization of the biochemical interplay between O. formigenes and the mammalian host.
- Findings suggest a potential mechanism for O. formigenes in modulating host metabolism relevant to kidney stone prevention.

