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Updated: Dec 5, 2025

Comprehensive Workflow of Mass Spectrometry-based Shotgun Proteomics of Tissue Samples
Published on: November 13, 2021
A high-stringency blueprint of the human proteome.
Subash Adhikari1, Edouard C Nice1,2, Eric W Deutsch3
1Faculty of Medicine, Health and Human Sciences, Department of Biomedical Sciences, Macquarie University, North Ryde, NSW, 2109, Australia.
The Human Proteome Project (HPP) achieved a 90.4% high-stringency human proteome blueprint, advancing our understanding of molecular processes in health and disease. This comprehensive human proteome data is crucial for cancer, cardiovascular, and infectious disease research.
Area of Science:
- Proteomics
- Genomics
- Molecular Biology
Background:
- The Human Proteome Organization (HUPO) initiated the Human Proteome Project (HPP) in 2010.
- The HPP aimed to establish global collaboration for proteome data sharing, quality assurance, and accurate genome-encoded proteome annotation.
Purpose of the Study:
- To report the HPP's progress on its tenth anniversary.
- To present a high-stringency human proteome blueprint.
- To demonstrate the utility of proteome knowledge in understanding and treating diseases.
Main Methods:
- Established international collaborations and developed guidelines and metrics.
- Reanalyzed previously deposited community data.
- Increased the coverage of the human proteome through ongoing efforts.
Main Results:
- Achieved a 90.4% complete high-stringency human proteome blueprint.
- Demonstrated the essential role of proteome knowledge in discerning molecular processes.
- Highlighted the proteome's potential in understanding, diagnosing, and treating cancers, cardiovascular diseases, and infectious diseases.
Conclusions:
- The HPP has significantly advanced human proteome coverage over a decade.
- The comprehensive human proteome blueprint is vital for biomedical research.
- Proteomics data is fundamental for progress in human health and disease management.
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