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Updated: Dec 5, 2025

A Reporter Based Cellular Assay for Monitoring Splicing Efficiency
Published on: September 15, 2021
The splicing modulator sulfonamide indisulam reduces AR-V7 in prostate cancer cells
James E Melnyk1, Veronica Steri2, Hao G Nguyen3
1Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA.
Abstract:
Alternative splicing of the androgen receptor (AR) is frequently observed in castration resistant prostate cancer (CRPC). One AR isoform, the AR-V7 splice variant, is a constitutively active transcription factor which lacks a ligand binding domain and is therefore undruggable. AR-V7 expression correlates with resistance to androgen receptor signaling inhibitors (ARSi) and poor clinical prognoses. The occurrence of the AR-V7 splice variant is driven by alternative splicing of AR pre-mRNA by the spliceosome, however the mechanistic details are poorly understood. We demonstrate that the splicing factor RBM39 is critical for alternative splicing of the AR-V7 splice variant mRNA transcripts from AR pre-mRNA, and that the anti-cancer drug, indisulam, reduces AR-V7 mRNA levels by degrading RBM39. We report that indisulam effectively reduces AR-V7 in in vitro and in vivo models.
Insights
The splicing factor RBM39 drives androgen receptor variant 7 (AR-V7) in prostate cancer. The drug indisulam degrades RBM39, reducing AR-V7 mRNA and offering a potential therapeutic strategy for castration resistant prostate cancer (CRPC).
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Alternative splicing of the androgen receptor (AR) is prevalent in castration resistant prostate cancer (CRPC).
- The AR-V7 splice variant is a constitutively active, undruggable transcription factor linked to resistance against androgen receptor signaling inhibitors (ARSi) and poor prognoses.
- Mechanisms driving AR-V7 expression via spliceosome activity on AR pre-mRNA are not fully understood.
Purpose of the Study:
- To elucidate the mechanistic details of AR-V7 splice variant formation.
- To identify key splicing factors involved in AR-V7 generation.
- To evaluate the therapeutic potential of targeting the AR-V7 splicing pathway.
Main Methods:
- Investigated the role of splicing factor RBM39 in AR-V7 alternative splicing.
- Assessed the impact of the anti-cancer drug indisulam on RBM39 and AR-V7 mRNA levels.
- Utilized in vitro and in vivo models to validate findings.
Main Results:
- Demonstrated that splicing factor RBM39 is critical for AR-V7 alternative splicing.
- Showed that indisulam reduces AR-V7 mRNA levels by inducing RBM39 degradation.
- Confirmed that indisulam effectively reduces AR-V7 in both in vitro and in vivo experimental settings.
Conclusions:
- RBM39 is a key driver of AR-V7 splice variant formation in CRPC.
- Indisulam effectively targets RBM39, leading to decreased AR-V7 expression.
- Indisulam represents a promising therapeutic agent for CRPC by inhibiting AR-V7 production.
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