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Training atomic neural networks using fragment-based data generated in virtual reality.

Silvia Amabilino1, Lars A Bratholm1, Simon J Bennie1

  • 1School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom.

The Journal of Chemical Physics
|October 23, 2020
PubMed
Summary
This summary is machine-generated.

Virtual reality (VR) aids in generating high-quality molecular data for training atomic neural networks (ANNs). This accelerates the accurate prediction of energies for complex molecular systems using smaller datasets.

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Area of Science:

  • Computational Chemistry
  • Molecular Modeling
  • Artificial Intelligence in Chemistry

Background:

  • Accurate molecular energy descriptions are crucial for understanding and engineering molecular structures.
  • Traditional methods for mapping potential energy surfaces (PES) can be computationally intensive, especially for high-dimensional systems.

Purpose of the Study:

  • To introduce a novel paradigm for deriving energy functions of hyperdimensional molecular systems.
  • To leverage virtual reality (VR) for efficient data generation and training of atomic neural networks (ANNs).

Main Methods:

  • Generating low-dimensional molecular system data within a virtual reality (VR) environment.
  • Utilizing this curated data to train atomic neural networks (ANNs) for predicting potential energy surfaces (PES).
  • Focusing on chemical reactions with fewer than eight heavy atoms for initial data generation.

Main Results:

  • Successfully trained ANNs to predict energies of higher-dimensional systems (nearly 100 atoms) using a small dataset (15k geometries).
  • Achieved mean absolute errors of approximately 2 kcal mol-1.
  • Demonstrated the feasibility of generating an ANN-PES for a large reactive radical with a minimal dataset.

Conclusions:

  • Virtual reality (VR) enables intelligent curation of high-quality molecular data.
  • This approach significantly accelerates the learning process for developing accurate atomic neural network potential energy surfaces (ANN-PES).
  • The methodology shows promise for efficient modeling of complex molecular systems.