Related Experiment Video
Updated: Dec 4, 2025

Liquid-cell Transmission Electron Microscopy for Tracking Self-assembly of Nanoparticles
Published on: October 16, 2017
Use the force! Reduced variance estimators for densities, radial distribution functions, and local mobilities in
1Sorbonne Université, CNRS, Physico-Chimie des électrolytes et Nanosystèmes Interfaciaux, F-75005 Paris, France.
Abstract:
Even though the computation of local properties, such as densities or radial distribution functions, remains one of the most standard goals of molecular simulation, it still largely relies on straightforward histogram-based strategies. Here, we highlight recent developments of alternative approaches leading, from different perspectives, to estimators with a reduced variance compared to conventional binning. They all make use of the force acting on the particles, in addition to their position, and allow us to focus on the non-trivial part of the problem in order to alleviate (or even remove in some cases) the catastrophic behavior of histograms as the bin size decreases. The corresponding computational cost is negligible for molecular dynamics simulations, since the forces are already computed to generate the configurations, and the benefit of reduced-variance estimators is even larger when the cost of generating the latter is high, in particular, with ab initio simulations. The force sampling approach may result in spurious residual non-zero values of the density in regions where no particles are present, but strategies are available to mitigate this artifact. We illustrate this approach on number, charge, and polarization densities, radial distribution functions, and local transport coefficients, discuss the connections between the various perspectives, and suggest future challenges for this promising approach.
More Related Videos
12:05A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA
Published on: October 1, 2017
06:37Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
Published on: September 17, 2021
Related Concept Videos
Distribution of Molecular Speeds
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation
On...
Maxwell-Boltzmann Distribution: Problem Solving
This distribution function f(v) is defined by saying that the expected number N (v1,v2) of particles with speeds between v1 and v2 is given by
Mean free path and Mean free time
Mechanistic Models: Compartment Models in Individual and Population Analysis