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Updated: Dec 3, 2025

Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
An allosteric interaction controls the activation mechanism of SHP2 tyrosine phosphatase
Massimiliano Anselmi1,2, Jochen S Hub3
1Institute for Microbiology and Genetics, Georg-August-Universität Göttingen, 37077, Göttingen, Germany. manselm@gwdg.de.
Abstract:
SHP2 is a protein tyrosine phosphatase (PTP) involved in multiple signaling pathways. Mutations of SHP2 can result in Noonan syndrome or pediatric malignancies. Inhibition of wild-type SHP2 represents a novel strategy against several cancers. SHP2 is activated by binding of a phosphopeptide to the N-SH2 domain of SHP2, thereby favoring dissociation of the N-SH2 domain and exposing the active site on the PTP domain. The conformational transitions controlling ligand affinity and PTP dissociation remain poorly understood. Using molecular simulations, we revealed an allosteric interaction restraining the N-SH2 domain into a SHP2-activating and a stabilizing state. Only ligands selecting for the activating N-SH2 conformation, depending on ligand sequence and binding mode, are effective activators. We validate the model of SHP2 activation by rationalizing modified basal activity and responsiveness to ligand stimulation of several N-SH2 variants. This study provides mechanistic insight into SHP2 activation and may open routes for SHP2 regulation.
Insights
SHP2 protein activation is controlled by an allosteric interaction that stabilizes its N-SH2 domain. Only specific ligands binding to this conformation effectively activate SHP2, offering new cancer treatment strategies.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- SHP2 (Src homology 2 domain-containing protein tyrosine phosphatase) is a key regulator in multiple signaling pathways.
- Mutations in SHP2 are linked to Noonan syndrome and pediatric cancers, making wild-type SHP2 inhibition a potential cancer therapy strategy.
Purpose of the Study:
- To elucidate the poorly understood conformational transitions governing SHP2 activation and ligand binding.
- To provide mechanistic insights into SHP2 allosteric regulation for potential therapeutic targeting.
Main Methods:
- Utilized molecular simulations to investigate the allosteric mechanisms of SHP2 activation.
- Analyzed the role of the N-SH2 domain in SHP2 conformational changes and ligand interactions.
- Validated the proposed model using N-SH2 variants with altered activity and responsiveness.
Main Results:
- Identified a crucial allosteric interaction that stabilizes the N-SH2 domain in an activating conformation.
- Demonstrated that only ligands binding to this specific activating conformation effectively activate SHP2.
- Rationalized the activity of N-SH2 variants, confirming the model of SHP2 activation.
Conclusions:
- SHP2 activation is critically dependent on ligand-induced selection of a specific N-SH2 domain conformation.
- This study provides a mechanistic understanding of SHP2 regulation, paving the way for targeted therapeutic interventions.
- Findings may open new avenues for developing SHP2 inhibitors or activators for cancer treatment.
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