Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Remodeling of gut bacteriome and virome in acute retinal necrosis: expansion of <i>Enterobacteriaceae</i>-related taxa.

Frontiers in microbiology·2026
Same author

Tip functionalization of anisotropic plasmonic nanoparticles with conductive polymer patches via site-selective micelle intercalation.

Nature communications·2026
Same author

Epigallocatechin Gallate (EGCG) Inhibits Singapore Grouper Iridovirus (SGIV) Infection by Interfering With Viral Life Cycle and Modulating Host Cell Cycle G2/M Checkpoint.

Journal of fish diseases·2026
Same author

Development and validation of a modified QuEChERS-LC-MS/MS method for multi-class pesticide residue analysis in soils from pesticide production sites.

Journal of chromatography. A·2026
Same author

Quantum Dot-Based Dual-Fluorescence Aptasensing Platform Using Interface-Engineered MXene for Multiplex Protein Detection.

Sensors (Basel, Switzerland)·2026
Same author

[Potential Mechanisms and Research Advances of HDAC1 in Lung Cancer].

Zhongguo fei ai za zhi = Chinese journal of lung cancer·2026

Related Experiment Video

Updated: Jun 25, 2026

Assembly and Characterization of Polyelectrolyte Complex Micelles
08:44

Assembly and Characterization of Polyelectrolyte Complex Micelles

Published on: March 2, 2020

11.3K

Quantifying patterns in optical micrographs of one- and two-dimensional ellipsoidal particle assemblies.

Veronica Grebe1, Mingzhu Liu, Marcus Weck

  • 1Molecular Design Institute and Department of Chemistry, New York University, New York, NY 10003, USA. marcus.weck@nyu.edu.

Soft Matter
|October 29, 2020
PubMed
Summary

This article introduces new computational tools designed to automatically identify and count different structural patterns within images of complex particle arrangements. By analyzing the angles and spacing between neighboring particles, these methods can classify individual components into specific geometric groups. The approach works for both simple chains and complex two-dimensional crystals, providing researchers with detailed quantitative data. These flexible algorithms can be applied to various materials, including nanoparticles and biological samples, to improve the accuracy of structural analysis.

Keywords:
colloidal sciencepattern recognitionanisotropic colloidssymmetry groupscomputational microscopy

Frequently Asked Questions

More Related Videos

Three-Dimensional Particle Shape Analysis Using X-ray Computed Tomography: Experimental Procedure and Analysis Algorithms for Metal Powders
10:10

Three-Dimensional Particle Shape Analysis Using X-ray Computed Tomography: Experimental Procedure and Analysis Algorithms for Metal Powders

Published on: December 4, 2020

2.0K
Patterning of Microorganisms and Microparticles through Sequential Capillarity-assisted Assembly
10:17

Patterning of Microorganisms and Microparticles through Sequential Capillarity-assisted Assembly

Published on: November 4, 2021

3.6K

Related Experiment Videos

Last Updated: Jun 25, 2026

Assembly and Characterization of Polyelectrolyte Complex Micelles
08:44

Assembly and Characterization of Polyelectrolyte Complex Micelles

Published on: March 2, 2020

11.3K
Three-Dimensional Particle Shape Analysis Using X-ray Computed Tomography: Experimental Procedure and Analysis Algorithms for Metal Powders
10:10

Three-Dimensional Particle Shape Analysis Using X-ray Computed Tomography: Experimental Procedure and Analysis Algorithms for Metal Powders

Published on: December 4, 2020

2.0K
Patterning of Microorganisms and Microparticles through Sequential Capillarity-assisted Assembly
10:17

Patterning of Microorganisms and Microparticles through Sequential Capillarity-assisted Assembly

Published on: November 4, 2021

3.6K

Area of Science:

  • Colloidal science research using ellipsoidal particle assemblies
  • Computational image processing and pattern recognition techniques

Background:

No prior work had resolved the challenge of standardizing image analysis for increasingly complex anisotropic colloidal arrangements. Researchers currently struggle to quantify crystal structures within diverse geometric particle assemblies efficiently. Prior research has shown that manual classification of these patterns remains time-consuming and prone to human error. That uncertainty drove the development of automated computational approaches to handle growing datasets. It was already known that geometric diversity in colloids requires robust analytical frameworks for accurate characterization. This gap motivated the creation of versatile algorithms capable of processing varied image inputs. Existing methods often lack the flexibility needed to adapt to different symmetry groups or particle orientations. No previous studies had provided a unified framework for classifying mixed pattern assemblies across different dimensionalities.

Purpose Of The Study:

The aim of this study is to introduce algorithms capable of quantitatively analyzing images of complex particle assemblies. As the geometric diversity of anisotropic colloids increases, the need for ubiquitous analytical tools becomes more urgent. The researchers seek to provide a method for classifying colloidal structures based on abstracted interparticle relationship information. This work addresses the challenge of quantifying the abundance of each structure in mixed pattern assemblies. The authors intend to create flexible parameters that allow the algorithms to be adapted for different image analysis requirements. By focusing on ellipsoidal particles, the study provides a framework for handling complex, non-spherical arrangements. The motivation stems from the difficulty of manually processing increasingly intricate crystal structures in colloidal science. This research establishes a foundation for automated, high-throughput analysis of images containing various particle types.

Main Methods:

The review approach focuses on the development of algorithms designed for classifying colloidal structures based on abstracted interparticle relationship information. Researchers implemented a system that calculates angle relationships between adjacent components to determine specific structural patterns. The design incorporates neighbor counts as a secondary parameter to refine the classification criteria for each particle. This approach allows for the labeling and quantification of particles into defined symmetry classes within a mixed assembly. The team presented three distinct test cases, including a one-dimensional chain and two two-dimensional polymorphic crystals, to validate the methodology. Each algorithm parameter remains adjustable, ensuring the tools can be adapted for various image analysis tasks. The script supports looping, which enables the automatic processing of multiple frames or video sequences. This computational framework provides a labeled output image along with detailed counts for each identified class.

Main Results:

The primary finding demonstrates that the algorithms effectively classify and quantify structures within mixed pattern assemblies of ellipsoidal particles. The researchers successfully applied the method to a one-dimensional chain and two distinct two-dimensional polymorphic crystals. Each crystal consisted of assemblies of two different plane symmetry groups, confirming the versatility of the classification rules. The results show that combining angular relationships and neighbor counts allows for precise labeling of individual particles. The yielded data include both a labeled image and specific particle counts for every defined symmetry class. This quantitative information enables a deeper investigation into the abundance of each structure within the mixed assemblies. The study confirms that the script can be looped to achieve automatic processing for multiple images or video frames. These results highlight the capability of the algorithms to handle varying levels of geometric complexity in colloidal systems.

Conclusions:

The authors propose that these flexible algorithms enable precise characterization of mixed pattern colloidal assemblies. This review suggests that combining angular relationships with neighbor counts provides a robust classification framework. The researchers indicate that their approach successfully labels particles within defined symmetry groups across different dimensionalities. Synthesis and implications show that the script effectively processes both individual images and video frames for automated workflows. The study demonstrates that adjusting algorithm parameters allows for adaptation to diverse image types. The authors envision that these tools will assist in the quantitative analysis of various ellipsoidal materials. This work implies that automated image processing significantly enhances the study of complex particle arrangements. The findings suggest that the methodology offers a scalable solution for analyzing nanoparticles and biological matter.

The researchers propose a method calculating angular relationships and neighbor counts between adjacent particles. By combining these two specific parameters as classification criteria, the system labels each particle into a defined symmetry class, allowing for the quantification of different structural patterns within a mixed assembly.

The authors utilize a script that can be looped to process multiple images or individual frames from a video. This tool allows for automatic processing, which facilitates the quantitative analysis of complex, mixed-pattern assemblies of ellipsoidal particles.

The researchers state that calculating angle relationships between neighbouring particles is necessary to distinguish between different plane symmetry groups. This technical requirement ensures that the algorithm can accurately categorize particles within 2D polymorphic crystals.

The algorithm uses the classification results to generate a labeled image and provide particle counts for each defined class. This data type allows for more in-depth analysis of the abundance of each structure within the mixed pattern assembly.

The authors measured the effectiveness of their approach by analyzing three distinct assembly types: a one-dimensional particle chain and two two-dimensional polymorphic crystals. These tests demonstrated the algorithm's ability to handle different geometric complexities and symmetry groups.

The researchers propose that these algorithms will have utility in the quantitative analysis of images comprising ellipsoidal colloidal materials, nanoparticles, or biological matter. This implication suggests a broad application for the developed computational framework in various scientific fields.