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Updated: Dec 2, 2025

Isolation and Characterization of Single Cells from Zebrafish Embryos
Published on: March 12, 2016
Single-cell transcriptome analysis reveals thyrocyte diversity in the zebrafish thyroid gland
Pierre Gillotay1, Meghna Shankar1, Benoit Haerlingen1
1IRIBHM, Université Libre de Bruxelles (ULB), Brussels, Belgium.
Thyroid cells are not homogenous. Researchers discovered distinct subpopulations of thyrocytes, including a pax2a-low group, revealing new insights into thyroid gland regulation and metabolism.
Area of Science:
- Endocrinology
- Cell Biology
- Developmental Biology
Background:
- The thyroid gland regulates crucial physiological processes like growth and metabolism through thyroid hormone production.
- Thyrocytes, the cells forming thyroid follicles, have been traditionally considered a uniform population.
- Understanding thyrocyte heterogeneity is key to a comprehensive view of thyroid function.
Purpose of the Study:
- To investigate potential heterogeneity within the thyrocyte population.
- To molecularly characterize non-thyrocyte cells in the zebrafish thyroid gland region.
- To identify distinct subpopulations of thyrocytes and their molecular profiles.
Main Methods:
- Development of a single-cell transcriptome atlas of the zebrafish thyroid gland region, encompassing 6249 cells.
- Analysis of cell types including thyrocytes, vascular, immune, and fibroblast cells.
- Generation of a CRISPR/Cas9-based pax2a knock-in zebrafish line to track pax2a expression in thyrocytes.
Main Results:
- The single-cell atlas revealed heterogeneity in thyrocyte gene expression, notably bimodal expression of the transcription factor pax2a.
- Validation using the pax2a knock-in line identified a distinct population of pax2a-low mature thyrocytes within follicles.
- RNA sequencing of pax2a-high and pax2a-low thyrocytes showed 20% differential gene expression between these subpopulations.
Conclusions:
- Thyrocytes are not a homogenous cell population as previously assumed.
- Transcriptional differences exist between distinct thyrocyte subpopulations, exemplified by pax2a expression levels.
- This study provides a foundational resource for understanding thyroid cell diversity and function.
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