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Updated: Dec 2, 2025

Quantitative Structure-Activity Relationship, Activity Prediction, and Molecular Dynamics of Non-nucleotide Reverse Transcriptase Inhibitors
Published on: May 9, 2025
Molecular dynamic simulation (MDS) and in vitro cathepsin-B inhibitory activity of decrusin angelate, ibuprofen, and
Chanchal Sharma1, Sun Chul Kang1
1Department of Biotechnology, College of Engineering, Daegu University, Gyeongsan, Republic of Korea.
Abstract:
Attenuation of cathepsin B (CATB) proteolytic activity and/or inhibition serves as a potential therapeutic target in cancer metastasis. Herein, we determined the specificity of FDA approved potential anti-cancer natural flavonoid decursinol angelate (DA), thymol (TH) and a propionic acid derivative ibuprofen (IB), for the inactivation of CATB. We used enzymatic assay, computational and in vitro methods for the identification of the best candidate. Out of these we found DA can inhibit CATB with lowest IC50 measured after one hour of incubation using Z-Phe-Arg-4MβNA (BANA) as a substrate. Docking analysis suggested favorable interaction of DA with the catalytic site residues (GLN23, CYS26, HIS110, HIS111) of CATB (PDB Id: 1HUC) were responsible for the inhibition of its proteolytic activity. Additionally, in vitro quantification with human colorectal carcinoma (HCT 116) revealed, DA rapidly inactivates CATB as compared with commercial synthetic inhibitor CA074 with no cellular toxicity towards normal colon cells (CCD 841).
Insights
Decursinol angelate (DA) effectively inhibits cathepsin B (CATB), a key enzyme in cancer metastasis. This natural flavonoid shows potent activity and no toxicity, making it a promising therapeutic candidate.
Area of Science:
- Biochemistry
- Pharmacology
- Oncology
Background:
- Cathepsin B (CATB) proteolytic activity is a therapeutic target for inhibiting cancer metastasis.
- Natural compounds and synthetic drugs are explored for their potential to inhibit CATB.
Purpose of the Study:
- To determine the specificity and efficacy of decursinol angelate (DA), thymol (TH), and ibuprofen (IB) in inhibiting CATB.
- To identify the best candidate for CATB inhibition among the tested compounds.
Main Methods:
- Enzymatic assays using Z-Phe-Arg-4MβNA (BANA) substrate.
- Computational docking analysis with CATB (PDB Id: 1HUC).
- In vitro studies using human colorectal carcinoma (HCT 116) cells and normal colon cells (CCD 841).
Main Results:
- Decursinol angelate (DA) demonstrated the lowest IC50 for CATB inhibition.
- Docking analysis revealed favorable interactions between DA and CATB catalytic site residues.
- DA rapidly inactivated CATB in HCT 116 cells with no observed toxicity to normal colon cells.
Conclusions:
- Decursinol angelate is a potent inhibitor of cathepsin B.
- DA's interaction with CATB's catalytic site explains its inhibitory activity.
- DA presents a promising, non-toxic therapeutic agent for targeting cancer metastasis.
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