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Updated: Dec 1, 2025

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Novel PPOX exonic mutation inducing aberrant splicing in a patient with homozygous variegate porphyria
Sun Young Cho1, Eunice Yuen-Ting Lau2, David Chi-Kong Luk3
1Department of Laboratory Medicine, School of Medicine, Kyung Hee University, Seoul, Republic of Korea.
Introduction:
Variegate porphyria (VP; OMIM 176200) is one of the acute hepatic porphyrias, and it is characterized by the partial deficiency of protoporphyrinogen oxidase (PPOX). The unusual homozygous variant with mutations on both alleles of PPOX is distinguished with general heterozygous VP by several typical points such as severe defect in PPOX enzyme activity, early onset of photosensitivity before puberty, and skeletal deformity.
Material And Method:
In this study, we describe a very rare case of autosomal recessive form of true homozygous VP found in a Chinese patient with consanguineous parents. Sanger sequencing of the PPOX gene showed a novel homozygous variant located at the first base of exon 8 of the gene, i.e., NM_000309.3c.808G > T. To investigate aberrant splicing induced by the mutant, wild-type exon 8 and mutant exon 8 were expressed in pET01 vector as minigene in cultured-cells and analyzed by RT-PCR.
Results:
The wildtype PPOX showed an expected band in the gel electrophoresis after RT-PCR. The PPOX c.808G > T only showed a band similar to the band size of the vector only control. This result suggested c.808G > T mutant is an exonic mutation inducing aberrant splicing of pre-mRNA of the PPOX gene.
Conclusion:
This study showed a very rare case of homozygous VP with autosomal recessive homoallelic pattern. In comparison with previous cases of homozygous VP presenting brachydactyly, it is notable that our patient did not have any skeletal deformities.
Insights
This study reports a rare case of homozygous variegate porphyria (VP) in a Chinese patient, revealing a novel PPOX gene mutation causing aberrant splicing. Unlike other homozygous VP cases, this patient showed no skeletal deformities.
Area of Science:
- Genetics
- Biochemistry
- Rare Diseases
Background:
- Variegate porphyria (VP) is an acute hepatic porphyria caused by protoporphyrinogen oxidase (PPOX) deficiency.
- Homozygous VP presents distinct features, including severe enzyme deficiency, early photosensitivity, and skeletal deformities.
Purpose of the Study:
- To describe a rare case of autosomal recessive homozygous VP in a Chinese patient.
- To identify and characterize a novel PPOX gene mutation and its effect on mRNA splicing.
Main Methods:
- Case study of a Chinese patient with consanguineous parents.
- Sanger sequencing of the PPOX gene to identify mutations.
- Minigene assay and RT-PCR to analyze aberrant splicing of the PPOX gene.
Main Results:
- A novel homozygous PPOX variant (c.808G>T) was identified in the patient.
- The PPOX c.808G>T mutation induced aberrant splicing of the PPOX pre-mRNA.
- The patient presented with homozygous VP but lacked typical skeletal deformities.
Conclusions:
- This case represents a rare instance of homozygous VP with an autosomal recessive homoallelic pattern.
- The identified PPOX mutation leads to aberrant splicing and contributes to VP pathogenesis.
- Absence of skeletal deformities in this patient differentiates it from previously reported homozygous VP cases.
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