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Updated: Dec 1, 2025

Understanding the Impact of Temperate Bacteriophages on Their Lysogens Through Transcriptomics
Published on: January 5, 2024
Intrinsic resistance of Enterococcus faecalis strains to ΦEf11 phage endolysin is associated with the presence of
Hongming Zhang1, Roy H Stevens2
1Laboratory of Oral Infectious Diseases, Kornberg School of Dentistry, Temple University, Philadelphia, PA, 19140, USA.
Abstract:
The use of bacteriophage-encoded murein hydrolases (endolysins) is being actively explored as a means of controlling multidrug-resistant pathogens. Previously, we isolated and characterized one such enzyme, the phage ΦEf11 ORF28 lysin, which demonstrated profound antimicrobial activity against many strains of Enterococcus faecalis. Although the lysin is eminently active against many vancomycin-resistant enterococal (VRE) strains, and displays lower minimum inhibitory concentrations than vancomycin against vancomycin-sensitive strains, there is a subset of E. faecalis strains that is not affected by the lysin. Currently, there is no explanation for the disparate sensitivity to ORF28 lysin among E. faecalis strains. In the present investigation, we show that the intrinsic insensitivity of the insusceptible strains to the lysin is associated with the presence of a ΦEf11 prophage. Of the strains harboring phage ΦEf11 genes (N = 28), 68% were insensitive to the lysin, whereas 91% of the strains (N = 75) lacking detectable ΦEf11 genes demonstrated lysin sensitivity. Furthermore, curing a lysin-resistant, lysogenic E. faecalis strain resulted in a lysin-sensitive derivative, whereas lysogenizing a wild-type non-lysogenic strain converted it from lysin sensitivity to lysin resistance. Our results suggest that lysin resistance comes about through lysogenic conversion of non-lysogenic, lysin-sensitive strains.
Insights
Bacteriophage endolysins show promise against multidrug-resistant pathogens. However, some Enterococcus faecalis strains resist the ΦEf11 ORF28 lysin due to the presence of a ΦEf11 prophage, indicating lysogenic conversion confers resistance.
Area of Science:
- Microbiology
- Molecular Biology
- Antimicrobial Resistance
Background:
- Bacteriophage-encoded murein hydrolases (endolysins) are explored for combating multidrug-resistant pathogens.
- The ΦEf11 ORF28 lysin exhibits significant antimicrobial activity against Enterococcus faecalis, including vancomycin-resistant strains (VRE).
- A subset of E. faecalis strains displays intrinsic resistance to the ORF28 lysin, with the underlying mechanism previously unexplained.
Purpose of the Study:
- To investigate the cause of disparate ORF28 lysin sensitivity among E. faecalis strains.
- To determine the role of the ΦEf11 prophage in lysin resistance.
- To elucidate the mechanism of lysin resistance in E. faecalis.
Main Methods:
- Comparative analysis of ΦEf11 prophage presence in lysin-sensitive and lysin-resistant E. faecalis strains.
- Experimental lysogenic conversion: curing lysogenic strains and lysogenizing non-lysogenic strains.
- Phenotypic assessment of lysin sensitivity before and after prophage manipulation.
Main Results:
- Intrinsic lysin insensitivity in E. faecalis is strongly associated with the presence of a ΦEf11 prophage.
- Strains harboring ΦEf11 genes showed significantly higher rates of lysin insensitivity (68%) compared to strains lacking these genes (9%).
- Experimental manipulation confirmed that lysogenic conversion is responsible for the transition from lysin sensitivity to resistance.
Conclusions:
- Lysin resistance in E. faecalis is mediated by lysogenic conversion, where the presence of the ΦEf11 prophage confers resistance.
- Understanding this mechanism is crucial for the effective therapeutic application of endolysins against E. faecalis infections.
- This study identifies a key factor determining the efficacy of phage lysins as antimicrobial agents.
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