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Published on: May 5, 2014
Interference with viral infection by defective RNA replicase
1Department of Molecular Biology, School of Medicine, Keio University, Tokyo, Japan.
Abstract:
RNA-dependent RNA and DNA polymerases have a conserved segment, Tyr-X-Asp-Asp (G. Karmer and P. Argos, Nucleic Acids Res. 12:7269-7282, 1984). To investigate the function of this segment, we changed the Gly residue at position 357 in the conserved sequence Tyr-356-Gly-357-Asp-358-Asp-359 of the replicase of RNA coliphage Q beta to Ala, Ser, Pro, Met, or Val and examined the replicase activity in vivo. Cells carrying the variant plasmids lost the replicase activity and severely inhibited the proliferation of phage Q beta (group III) and related phage SP (group IV) by suppressing phage RNA synthesis. In contrast, substitution of the Gly residue at 390 showed only a slight inhibitory effect, although replicase activity was also lost. These results suggest that the cells harboring an altered replicase at the conserved segment can interfere specifically with the wild-type phage and different but related phage infections.
Insights
Altering a key Glycine residue in the Q beta phage replicase conserved segment significantly inhibits phage proliferation by suppressing RNA synthesis. This suggests specific interference with wild-type and related phage infections.
Area of Science:
- Molecular Biology
- Virology
- Enzymology
Background:
- RNA-dependent RNA and DNA polymerases share a conserved Tyr-X-Asp-Asp motif.
- This motif is crucial for polymerase function.
Purpose of the Study:
- To investigate the function of the conserved Tyr-Gly-Asp-Asp segment in Q beta phage replicase.
- To determine the in vivo effects of altering the Glycine residue at position 357.
Main Methods:
- Site-directed mutagenesis was used to substitute Glycine-357 with Alanine, Serine, Proline, Methionine, or Valine in the Q beta replicase.
- Replicase activity and phage proliferation were examined in vivo.
Main Results:
- Mutations at Glycine-357 abolished replicase activity and severely inhibited Q beta and SP phage proliferation.
- These altered replicases suppressed phage RNA synthesis.
- Substitution at Glycine-390 had a minor inhibitory effect despite loss of replicase activity.
Conclusions:
- The conserved Tyr-Gly-Asp-Asp segment is critical for Q beta phage replicase function.
- Altered replicases at this conserved segment specifically interfere with wild-type and related phage infections.
- This provides insights into phage-host interactions and potential antiviral strategies.
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