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Updated: Nov 30, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Mus81-Mms4 endonuclease is an Esc2-STUbL-Cullin8 mitotic substrate impacting on genome integrity
Anja Waizenegger1, Madhusoodanan Urulangodi1,2, Carl P Lehmann3
1IFOM, the FIRC Institute of Molecular Oncology, Via Adamello 16, 20139, Milan, Italy.
Abstract:
The Mus81-Mms4 nuclease is activated in G2/M via Mms4 phosphorylation to allow resolution of persistent recombination structures. However, the fate of the activated phosphorylated Mms4 remains unknown. Here we find that Mms4 is engaged by (poly)SUMOylation and ubiquitylation and targeted for proteasome degradation, a process linked to the previously described Mms4 phosphorylation cycle. Mms4 is a mitotic substrate for the SUMO-Targeted Ubiquitin ligase Slx5/8, the SUMO-like domain-containing protein Esc2, and the Mms1-Cul8 ubiquitin ligase. In the absence of these activities, phosphorylated Mms4 accumulates on chromatin in an active state in the next G1, subsequently causing abnormal processing of replication-associated recombination intermediates and delaying the activation of the DNA damage checkpoint. Mus81-Mms4 mutants that stabilize phosphorylated Mms4 have similar detrimental effects on genome integrity. Overall, our findings highlight a replication protection function for Esc2-STUbL-Cul8 and emphasize the importance for genome stability of resetting phosphorylated Mms4 from one cycle to another.
Insights
Phosphorylated Mms4 is degraded by the proteasome after its role in resolving DNA recombination structures. Failure to degrade Mms4 causes genome instability and delays DNA damage checkpoints.
Area of Science:
- Molecular Biology
- Cell Cycle Regulation
- DNA Repair
Background:
- The Mus81-Mms4 nuclease resolves DNA recombination structures during the G2/M phase, a process requiring Mms4 phosphorylation.
- The fate of phosphorylated Mms4 after its activation and function remains unclear.
Purpose of the Study:
- To investigate the post-activation fate of phosphorylated Mms4.
- To understand the regulatory mechanisms controlling Mms4 levels and its impact on genome stability.
Main Methods:
- SUMOylation and ubiquitylation assays to detect Mms4 modification.
- Proteasome degradation assays.
- Chromatin immunoprecipitation to assess Mms4 localization.
- Analysis of DNA damage checkpoint activation and genome integrity in wild-type and mutant strains.
Main Results:
- Phosphorylated Mms4 undergoes (poly)SUMOylation and ubiquitylation, targeting it for proteasome degradation.
- Mms4 is a substrate for the Esc2-STUbL-Cul8 ubiquitin ligase complex.
- Loss of Esc2-STUbL-Cul8 activity leads to Mms4 accumulation on chromatin, causing aberrant processing of recombination intermediates and delayed DNA damage checkpoint activation.
- Mutants stabilizing phosphorylated Mms4 compromise genome integrity.
Conclusions:
- Mms4 is regulated by proteasomal degradation, a process crucial for resetting its activity between cell cycles.
- The Esc2-STUbL-Cul8 complex plays a key role in replication protection by ensuring timely Mms4 turnover.
- Proper regulation of phosphorylated Mms4 is essential for maintaining genome stability.
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