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Updated: Nov 30, 2025

Digestion of Whole Mouse Eyes for Multi-Parameter Flow Cytometric Analysis of Mononuclear Phagocytes
Published on: June 17, 2020
Ocular macrophage origin and heterogeneity during steady state and experimental choroidal neovascularization
Steven Droho1, Benjamin R Thomson2, Hadijat M Makinde3
1Department of Ophthalmology, Feinberg School of Medicine, Northwestern University, 240 E Huron St, McGaw M343, Chicago, IL, 60611, USA.
Background:
Neovascular age-related macular degeneration (nAMD) commonly causes vision loss from aberrant angiogenesis, termed choroidal neovascularization (CNV). Macrophages are heterogeneous cells that are necessary for experimental CNV, present in human CNV samples, and can display diverse functions, which are dependent upon both their origin and tissue microenvironment. Despite these associations, choroidal macrophage heterogeneity remains unexplored.
Methods:
We performed multi-parameter flow cytometry on wildtype (WT) and Ccr2-/- mice after laser injury to identify macrophage subtypes, and determine which subsets originate from classical monocytes. To fate map tissue resident macrophages at steady state and after laser injury, we used the Cx3cr1CreER/+ ; Rosa26zsGFP/+ mouse model. We reanalyzed previously published single-cell RNA-seq of human choroid samples from healthy and nAMD patients to investigate human macrophage heterogeneity, disease association, and function.
Results:
We identified 4 macrophage subsets in mice: microglia, MHCII+CD11c-, MHCII+CD11c+, and MHCII-. Microglia are tissue resident macrophages at steady state and unaffected by laser injury. At steady state, MHCII- macrophages are long lived, tissue resident macrophages, while MHCII+CD11c- and MHCII+CD11c+ macrophages are partially replenished from blood monocytes. After laser injury, MHCII+CD11c- macrophages are entirely derived from classical monocytes, MHCII- macrophages originate from classical monocytes (90%) and an expansion of tissue resident macrophages (10%), and MHCII+CD11c+ macrophages are derived from classical monocytes (70%), non-classical monocytes (10%), and an expansion of tissue resident macrophages (20%). Single-cell RNA-seq analysis of human choroid found 5 macrophage subsets: two MHCII+CD11C- and three MHCII+CD11C+ populations. One MHCII+CD11C+ subset was 78% derived from a patient with nAMD. Differential expression analysis identified up-regulation of pro-angiogenic gene expression in one MHCII+CD11C- and two MHCII+CD11C+ subsets, including the disease-associated cluster. The upregulated MHCII+CD11C- pro-angiogenic genes were unique compared to the increased MHCII+CD11C+ angiogenesis genes.
Conclusions:
Macrophage origin impacts heterogeneity at steady state and after laser injury in mice. Both mice and human patients demonstrate similar macrophage subtypes. Two discrete pro-angiogenic macrophage populations exist in the human choroid. Targeting specific, pro-angiogenic macrophage subsets is a potential novel therapeutic for nAMD.
Insights
Investigating choroidal macrophage heterogeneity in neovascular age-related macular degeneration (nAMD) revealed distinct pro-angiogenic subsets. Targeting these specific macrophage populations offers a potential novel therapeutic strategy for nAMD.
Area of Science:
- Ophthalmology
- Immunology
- Cell Biology
Background:
- Neovascular age-related macular degeneration (nAMD) causes vision loss via aberrant angiogenesis (choroidal neovascularization, CNV).
- Macrophages are crucial for CNV but their heterogeneity in the choroid remains unexplored.
- Understanding choroidal macrophage diversity is key to nAMD pathogenesis.
Purpose of the Study:
- To investigate choroidal macrophage heterogeneity in mice and humans.
- To identify macrophage subsets involved in neovascular age-related macular degeneration (nAMD).
- To explore potential therapeutic targets within specific macrophage populations.
Main Methods:
- Multi-parameter flow cytometry in mice after laser injury to identify macrophage subtypes and their origins.
- Fate mapping using Cx3cr1CreER/+ ; Rosa26zsGFP/+ mice to track tissue-resident macrophages.
- Reanalysis of single-cell RNA-seq data from human choroid samples of healthy and nAMD patients.
Main Results:
- Identified 4 distinct macrophage subsets in mice, with varying origins from monocytes and tissue-resident cells post-injury.
- Discovered 5 macrophage subsets in human choroid, with one subset significantly enriched in nAMD patients.
- Found upregulation of pro-angiogenic genes in specific human choroidal macrophage subsets, including the disease-associated cluster.
Conclusions:
- Macrophage origin significantly influences heterogeneity in the choroid, both at steady state and after injury.
- Similar macrophage subtypes are observed in both mice and human nAMD.
- Two distinct pro-angiogenic macrophage populations in the human choroid present a potential therapeutic target for nAMD.

