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Identification of Circular RNAs using RNA Sequencing
Published on: November 14, 2019
Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma
Qi Lv1, Chunhui Ma2, Haoming Li3
1Department of Medical Imaging, Tongji Hospital, Tongji University School of Medicine, Xincun road No. 389, Shanghai, China.
Abstract:
Background: Circular RNAs (circRNAs), a novel class of endogenous noncoding RNAs, are involved in a variety of diseases, including several types of cancers. We hypothesized that circRNAs are involved in the tumorigenesis and development of clear cell renal cell carcinoma (ccRCC). Methods: To verify our hypothesis, we explored the circRNA expression profiles in 4 pairs of ccRCC tissues and their adjacent non-carcinoma tissues via microarray analysis. Selected circRNAs were further validated by qPCR. Moreover, hsa_circ_0005875 was selected for further study and the potential clinical values of hsa_circ_0005875 were investigated in 60 pairs of ccRCC tissues and adjacent normal controls. In addition, the role of hsa_circ_0005875 in ccRCC progression were performed using colony formation assay, Transwell assay and Martrigel-Transwell assay respectively. Finally, interactions between the circRNAs and miRNAs were predicted using Arraystar's miRNA target prediction software. Luciferase reporter assays were performed to evaluate the interaction between hsa_circ_0005875 and hsa_miR-145-5p. Results: The microarray data showed 1988 circRNAs were significantly dysregulated circRNAs, including 1033 upregulated and 955 downregulated ones in the ccRCC tissues. Hsa_circ_0005875 was confirmed to be significantly upregulated in the ccRCC tumor tissues and renal carcinoma cells. Further analysis revealed that hsa_circ_0005875 expression was associated with tumor size, pathological TNM stage, histological differentiation, and lymphatic metastasis. Functional experiments demonstrated that overexpression of hsa_circ_0005875 increased proliferation, migration and invasion abilities. Moreover, bioinformatics analysis and luciferase reporter assays suggest that hsa_circ_0005875 may serve as a ceRNA (competing endogenous RNA) of miR-145-5p to relieve the repressive effect of miR-145-5p on target ZEB2. Conclusions: These data indicate that hsa_circ_0005875 might play a role in promoting tumor growth and metastasis and be a potential biomarker of ccRCC.
Insights
Circular RNAs (circRNAs) are implicated in clear cell renal cell carcinoma (ccRCC) development. Hsa_circ_0005875 is upregulated in ccRCC, promoting tumor growth and metastasis, and may serve as a potential ccRCC biomarker.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Circular RNAs (circRNAs) are novel noncoding RNAs implicated in various diseases, including cancers.
- Their role in clear cell renal cell carcinoma (ccRCC) tumorigenesis requires further investigation.
Purpose of the Study:
- To investigate the role of circRNAs in ccRCC development.
- To identify potential circRNA biomarkers for ccRCC.
Main Methods:
- Microarray analysis of circRNA expression profiles in ccRCC tissues and adjacent non-carcinoma tissues.
- Quantitative real-time PCR (qPCR) for validation of selected circRNAs.
- Functional assays (colony formation, Transwell, Matrigel-Transwell) to assess the role of hsa_circ_0005875 in ccRCC progression.
- Bioinformatic prediction and luciferase reporter assays to elucidate circRNA-miRNA interactions.
Main Results:
- Microarray analysis revealed 1988 significantly dysregulated circRNAs in ccRCC tissues.
- Hsa_circ_0005875 was significantly upregulated in ccRCC tissues and cells.
- Hsa_circ_0005875 expression correlated with tumor size, TNM stage, differentiation, and lymphatic metastasis.
- Overexpression of hsa_circ_0005875 enhanced ccRCC cell proliferation, migration, and invasion.
- Hsa_circ_0005875 acts as a competing endogenous RNA (ceRNA) for hsa_miR-145-5p, potentially upregulating ZEB2.
Conclusions:
- Hsa_circ_0005875 plays a role in promoting ccRCC tumor growth and metastasis.
- Hsa_circ_0005875 is a potential diagnostic and prognostic biomarker for ccRCC.

