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Updated: Nov 30, 2025

Genetic Studies of Human DNA Repair Proteins Using Yeast as a Model System
Published on: March 18, 2010
Structure of the helicase core of Werner helicase, a key target in microsatellite instability cancers
Joseph A Newman1, Angeline E Gavard1, Simone Lieb2
1Structural Genomics Consortium, University of Oxford, Oxford, UK.
Abstract:
Loss of WRN, a DNA repair helicase, was identified as a strong vulnerability of microsatellite instable (MSI) cancers, making WRN a promising drug target. We show that ATP binding and hydrolysis are required for genome integrity and viability of MSI cancer cells. We report a 2.2-Å crystal structure of the WRN helicase core (517-1,093), comprising the two helicase subdomains and winged helix domain but not the HRDC domain or nuclease domains. The structure highlights unusual features. First, an atypical mode of nucleotide binding that results in unusual relative positioning of the two helicase subdomains. Second, an additional β-hairpin in the second helicase subdomain and an unusual helical hairpin in the Zn2+ binding domain. Modelling of the WRN helicase in complex with DNA suggests roles for these features in the binding of alternative DNA structures. NMR analysis shows a weak interaction between the HRDC domain and the helicase core, indicating a possible biological role for this association. Together, this study will facilitate the structure-based development of inhibitors against WRN helicase.
Insights
Loss of the WRN helicase is a vulnerability in microsatellite instable (MSI) cancers. Understanding WRN's structure and DNA binding is key to developing new MSI cancer therapies.
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Research
Background:
- Loss of the Werner syndrome protein (WRN) helicase is a vulnerability in microsatellite instable (MSI) cancers.
- WRN is crucial for maintaining genome integrity and cell viability in MSI cancer cells.
- WRN is a promising drug target for MSI cancer therapy.
Purpose of the Study:
- To elucidate the structural basis of WRN helicase function in MSI cancer cells.
- To provide insights for structure-based drug development targeting WRN.
Main Methods:
- X-ray crystallography of the WRN helicase core (residues 517-1,093) at 2.2-Å resolution.
- Biochemical assays to demonstrate the requirement of ATP binding and hydrolysis.
- DNA binding modeling and Nuclear Magnetic Resonance (NMR) analysis.
Main Results:
- Reported the crystal structure of the WRN helicase core, revealing an atypical nucleotide binding mode and unique structural features.
- Identified an additional β-hairpin and an unusual helical hairpin in the WRN helicase structure.
- NMR analysis indicated a weak interaction between the HRDC domain and the helicase core.
Conclusions:
- The unique structural features of WRN may be involved in binding alternative DNA structures.
- The findings facilitate structure-based development of WRN helicase inhibitors for MSI cancer treatment.
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