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Leaf shape in Populus tremula is a complex, omnigenic trait.

Niklas Mähler1, Bastian Schiffthaler1, Kathryn M Robinson1

  • 1Department of Plant Physiology Umeå Plant Science Centre Umeå University Umeå Sweden.

Ecology and Evolution
|November 19, 2020
PubMed
Summary
This summary is machine-generated.

Leaf shape variation in Eurasian aspen is genetically complex, influenced by many small gene expression changes. Identified genes suggest relaxed selection, aligning with the omnigenic model.

Keywords:
GWASPopulus tremulacomplex traitleaf shapenatural variationomnigenic

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Area of Science:

  • Plant genetics
  • Evolutionary biology
  • Genomics

Background:

  • Leaf shape is crucial for plant classification and exhibits significant variation within species.
  • Understanding the genetic basis of leaf shape variation is essential for plant breeding and evolutionary studies.

Purpose of the Study:

  • To characterize the genetic architecture of leaf shape variation in Eurasian aspen (Populus tremula).
  • To identify candidate genes underlying leaf shape diversity and their regulatory mechanisms.

Main Methods:

  • Genome-wide association study (GWAS) for leaf physiognomy traits in Populus tremula.
  • RNA-Seq and gene co-expression network analyses during leaf development.
  • Integration of population-wide expression data, eQTL analysis, and differential gene expression analysis.

Main Results:

  • Leaf shape variation is genetically complex, likely controlled by numerous small-effect gene expression variations.
  • Genes associated with leaf shape were peripheral in co-expression networks and showed signatures of relaxed selection.
  • No clear adaptive significance was identified for the observed leaf shape variation.

Conclusions:

  • Leaf shape in Eurasian aspen is a complex trait influenced by polygenic effects on gene expression.
  • The genetic architecture of leaf shape variation is consistent with the omnigenic model, suggesting widespread gene expression regulation.
  • The findings provide insights into the evolutionary processes shaping plant morphology.