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Updated: Nov 29, 2025

Daily Transfers, Archiving Populations, and Measuring Fitness in the Long-Term Evolution Experiment with Escherichia coli
Published on: August 18, 2023
Comparative study between discrete and continuum models for the evolution of competing phenotype-structured cell
Aleksandra Ardaševa1, Alexander R A Anderson2, Robert A Gatenby2
1Wolfson Centre for Mathematical Biology, University of Oxford, Oxford OX2 6GG, United Kingdom.
This study introduces a stochastic individual-based model for competing cell populations adapting to changing environments, revealing how bottleneck effects influence evolutionary dynamics and model predictions.
Area of Science:
- Evolutionary biology
- Mathematical modeling
- Population dynamics
Background:
- Deterministic continuum models analyze asexual species adaptation to fluctuating environments.
- These models lack stochastic variability of individual evolutionary paths.
- Stochastic individual-based models are needed to capture microevolutionary processes.
Purpose of the Study:
- Develop a stochastic individual-based model for coevolving, phenotype-structured cell populations.
- Investigate the impact of phenotypic variation and environmental fluctuations on population dynamics.
- Compare predictions with deterministic continuum models.
Main Methods:
- Developed a discrete-time branching random walk for individual cell evolution.
- Modeled nutrient levels with a difference equation including a consumption sink term.
- Formally derived the deterministic continuum counterpart (nonlocal PDEs and ODE).
- Compared individual-based and continuum models under varying conditions.
Main Results:
- Identified conditions where individual-based and continuum models diverge.
- Bottleneck effects, driven by low phenotypic variation probability, cause divergence.
- Lower initial fitness and heterogeneity exacerbate bottleneck effects.
- Initial population proportions influence the emergence of these effects.
Conclusions:
- Stochastic individual-based models capture crucial adaptive phenomena missed by continuum models.
- Bottleneck effects significantly alter population dynamics and model agreement.
- Findings are relevant for understanding early metastatic colonization and other evolutionary processes.
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