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Local conformal autoencoder for standardized data coordinates.

Erez Peterfreund1, Ofir Lindenbaum2, Felix Dietrich3

  • 1School of Computer Science and Engineering, Hebrew University of Jerusalem, Jerusalem 9190401, Israel.

Proceedings of the National Academy of Sciences of the United States of America
|November 24, 2020
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Summary
This summary is machine-generated.

We introduce the Local Conformal Autoencoder (LOCA), a deep learning tool for standardizing scientific data coordinates. LOCA learns geometric data structures, enabling accurate matching across different measurements and improving interpolation and extrapolation.

Keywords:
autoencodercanonical coordinatesdimensionality reductionmanifold learning

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Area of Science:

  • Data science
  • Machine learning
  • Computational geometry

Background:

  • Scientific measurements often involve complex, nonlinear deformations of underlying data structures.
  • Standardizing these coordinates is crucial for comparing observations from different instruments or experiments.
  • Existing methods struggle with preserving geometric information during coordinate transformation.

Purpose of the Study:

  • To develop a novel deep learning method for obtaining standardized data coordinates.
  • To create an algorithm that learns an isometric embedding of scientific measurements into a latent space.
  • To ensure recovered coordinates are invariant to manifold diffeomorphisms for cross-observation matching.

Main Methods:

  • Proposed the Local Conformal Autoencoder (LOCA), a deep learning model.
  • Modeled data observations as samples from a Riemannian manifold deformed by latent variables.
  • Employed a local z-scoring procedure within LOCA to rectify deformations while preserving geometric properties.

Main Results:

  • Demonstrated LOCA's ability to learn isometric embeddings in various model settings.
  • Showcased superior interpolation and extrapolation capabilities compared to state-of-the-art methods.
  • Validated LOCA's effectiveness in Wi-Fi localization and 3D surface reconstruction from 2D projections.

Conclusions:

  • LOCA provides a robust method for standardizing scientific data coordinates.
  • The algorithm effectively preserves essential geometric information, enabling invariant data matching.
  • LOCA shows significant promise for applications in diverse scientific domains requiring data standardization and comparison.