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Mapping Absolute DNA Density in Cell Nuclei using Single-molecule Localization Microscopy
Published on: November 11, 2025
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Toward Sub-Diffraction Imaging of Single-DNA Molecule Sensors Based on Stochastic Switching Localization Microscopy
Seungah Lee1, Indra Batjikh1, Seong Ho Kang1
1Department of Applied Chemistry and Institute of Natural Sciences, Kyung Hee University, Yongin-si, Gyeonggi-do 17104, Korea.
Sensors (Basel, Switzerland)
|November 25, 2020
Summary
Super-resolution microscopy allows detailed imaging of DNA nanostructures. Single-molecule localization microscopy techniques provide precise visualization for nanotechnology applications.
Area of Science:
- Nanotechnology
- Biophysics
- Microscopy
Background:
- Deoxyribonucleic acid (DNA) possesses unique properties for nanotechnology.
- High-resolution imaging is crucial for assessing nanoscale structures.
- Super-resolution (SR) microscopy overcomes diffraction limits for molecular visualization.
Purpose of the Study:
- To review advancements in SR imaging of DNA nano-objects.
- To discuss single-molecule localization microscopy (SMLM) techniques for DNA nanostructures.
- To explore applications and future directions in optical assessment of DNA nanostructures.
Main Methods:
- Utilizing specific binding of fluorophores to target molecules.
- Applying advanced single-molecule localization microscopy (SMLM) techniques.
- Discussing methods like direct stochastic optical reconstruction microscopy (dSTORM), binding-activated localization microscopy (BALM), and point accumulation for imaging nanoscale topography (PAINT).
Main Results:
- SR microscopy, particularly SMLM, enables precise optical assessment of DNA nanostructures.
- Various SMLM techniques offer distinct advantages for imaging DNA nano-objects.
- Demonstrated wide-range detection at the single-molecule level is achievable.
Conclusions:
- SR imaging with SMLM techniques is a powerful tool for analyzing DNA nanostructures.
- Understanding the advantages and limitations of different SMLM methods is key for their application.
- Future perspectives involve further development and application of these techniques in nanotechnology.

