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Updated: Nov 28, 2025

Defining Substrate Specificities for Lipase and Phospholipase Candidates
Published on: November 23, 2016
Structure of bacterial phospholipid transporter MlaFEDB with substrate bound
Nicolas Coudray1,2, Georgia L Isom1, Mark R MacRae1
1Department of Cell Biology, Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, United States.
Abstract:
In double-membraned bacteria, phospholipid transport across the cell envelope is critical to maintain the outer membrane barrier, which plays a key role in virulence and antibiotic resistance. An MCE transport system called Mla has been implicated in phospholipid trafficking and outer membrane integrity, and includes an ABC transporter, MlaFEDB. The transmembrane subunit, MlaE, has minimal sequence similarity to other transporters, and the structure of the entire inner-membrane MlaFEDB complex remains unknown. Here, we report the cryo-EM structure of MlaFEDB at 3.05 Å resolution, revealing distant relationships to the LPS and MacAB transporters, as well as the eukaryotic ABCA/ABCG families. A continuous transport pathway extends from the MlaE substrate-binding site, through the channel of MlaD, and into the periplasm. Unexpectedly, two phospholipids are bound to MlaFEDB, suggesting that multiple lipid substrates may be transported each cycle. Our structure provides mechanistic insight into substrate recognition and transport by MlaFEDB.
Insights
The MlaFEDB ABC transporter structure reveals a pathway for phospholipid transport in bacteria, crucial for outer membrane integrity and antibiotic resistance. This finding offers insights into bacterial cell envelope maintenance.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Phospholipid transport is vital for maintaining the outer membrane barrier in double-membraned bacteria.
- This barrier is essential for bacterial virulence and antibiotic resistance.
- The Mla (multiple lipid-binding) system, including the MlaFEDB ABC transporter, is implicated in phospholipid trafficking.
Purpose of the Study:
- To determine the structure of the inner-membrane MlaFEDB complex.
- To elucidate the mechanism of phospholipid transport mediated by MlaFEDB.
Main Methods:
- Cryo-electron microscopy (cryo-EM) was used to determine the structure of MlaFEDB.
- The structure was resolved at 3.05 Å resolution.
Main Results:
- The cryo-EM structure of MlaFEDB was determined, revealing distant evolutionary relationships to LPS, MacAB, and eukaryotic ABCA/ABCG transporters.
- A continuous transport pathway was identified from the MlaE substrate-binding site through MlaD to the periplasm.
- Two phospholipid molecules were found bound to MlaFEDB, suggesting multi-substrate transport per cycle.
Conclusions:
- The structure provides mechanistic insights into substrate recognition and transport by MlaFEDB.
- This work advances our understanding of phospholipid homeostasis and outer membrane biogenesis in bacteria.
- The findings may have implications for developing new antimicrobial strategies targeting bacterial membrane integrity.
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