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Published on: December 22, 2023
PCNA Monoubiquitination Is Regulated by Diffusion of Rad6/Rad18 Complexes along RPA Filaments
Mingjie Li1, Bhaswati Sengupta1, Stephen J Benkovic1
1Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, United States.
Abstract:
Translesion DNA synthesis (TLS) enables DNA replication through damaging modifications to template DNA and requires monoubiquitination of the proliferating cell nuclear antigen (PCNA) sliding clamp by the Rad6/Rad18 complex. This posttranslational modification is critical to cell survival following exposure to DNA-damaging agents and is tightly regulated to restrict TLS to damaged DNA. Replication protein A (RPA), the major single-strand DNA (ssDNA) binding protein complex, forms filaments on ssDNA exposed at TLS sites and plays critical yet undefined roles in regulating PCNA monoubiquitination. Here, we utilize kinetic assays and single-molecule FRET microscopy to monitor PCNA monoubiquitination and Rad6/Rad18 complex dynamics on RPA filaments, respectively. Results reveal that a Rad6/Rad18 complex is recruited to an RPA filament via Rad18·RPA interactions and randomly translocates along the filament. These translocations promote productive interactions between the Rad6/Rad18 complex and the resident PCNA, significantly enhancing monoubiquitination. These results illuminate critical roles of RPA in the specificity and efficiency of PCNA monoubiquitination and represent, to the best of our knowledge, the first example of ATP-independent translocation of a protein complex along a protein filament.
Insights
Replication protein A (RPA) recruits the Rad6/Rad18 complex to DNA damage sites, promoting essential PCNA monoubiquitination for translesion DNA synthesis and cell survival.
Area of Science:
- Molecular Biology
- DNA Repair
- Biochemistry
Background:
- Translesion DNA synthesis (TLS) is crucial for replicating damaged DNA.
- PCNA monoubiquitination by Rad6/Rad18 is essential for TLS.
- Replication protein A (RPA) interacts with TLS machinery but its role is unclear.
Purpose of the Study:
- To elucidate the role of RPA in regulating PCNA monoubiquitination.
- To investigate the dynamics of the Rad6/Rad18 complex on RPA filaments.
Main Methods:
- Kinetic assays to monitor PCNA monoubiquitination.
- Single-molecule Förster Resonance Energy Transfer (smFRET) microscopy to observe Rad6/Rad18 dynamics on RPA filaments.
Main Results:
- Rad6/Rad18 is recruited to RPA filaments via Rad18-RPA interactions.
- The Rad6/Rad18 complex translocates along RPA filaments.
- RPA-mediated translocation enhances PCNA monoubiquitination efficiency.
Conclusions:
- RPA plays a critical role in the specificity and efficiency of PCNA monoubiquitination.
- This study demonstrates ATP-independent translocation of a protein complex along a protein filament.
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