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A new decade and new data at SoyBase, the USDA-ARS soybean genetics and genomics database
Anne V Brown1, Shawn I Conners1, Wei Huang1
1USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA, USA.
Nucleic Acids Research
|December 2, 2020
Summary
SoyBase is a comprehensive genetic and genomic database for soybean research, offering curated data, genome assemblies, and variant exploration tools for breeders and scientists. It serves as a central hub for soybean community announcements and resources.
Area of Science:
- Genetics
- Genomics
- Bioinformatics
Background:
- SoyBase is a key resource for soybean genetic and genomic data.
- It provides integrated and curated information for researchers and breeders.
- Access to comprehensive soybean data is crucial for advancing crop improvement.
Purpose of the Study:
- To provide researchers and breeders with integrated and accessible soybean genetic and genomic data.
- To offer advanced tools for exploring genomic variation and gene expression.
- To serve as a central hub for the soybean research community.
Main Methods:
- Professionally curated genetic and genomic data integration.
- Development of interactive tools for variant and pan-genome visualization.
- Inclusion of soybean-specific ontologies for traits.
Main Results:
- SoyBase hosts multiple reference genome assemblies and genetic maps.
- Extensive variant and genotyping data sets are available, with visualization tools.
- Gene expression and epigenetic data are presented through various displays.
Conclusions:
- SoyBase is a vital, continuously updated resource for soybean research and breeding.
- The database facilitates exploration of soybean genetic diversity and genomic features.
- It supports the broader soybean research community through data accessibility and announcements.
