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Information enters the brain through encoding, which is the input of information into the memory system. Once sensory information is received from the environment, the brain labels or codes it. The information is then organized with similar information and connected to existing concepts. Encoding occurs through automatic processing and effortful processing.
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Updated: Nov 27, 2025

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GENCODE 2021.

Adam Frankish1, Mark Diekhans2, Irwin Jungreis3,4

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This summary is machine-generated.

The GENCODE project enhances human and mouse genome annotation using improved bioinformatics and experimental data. This foundational resource supports genome biology and clinical genomics research with accurate gene and transcript structures.

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Area of Science:

  • Genomics
  • Bioinformatics
  • Molecular Biology

Background:

  • The GENCODE project provides high-accuracy gene and transcript annotations for human and mouse genomes.
  • These annotations are crucial for genome biology and clinical genomics applications.
  • Annotation relies on experimental data and sophisticated bioinformatics pipelines.

Purpose of the Study:

  • To present advancements in the GENCODE annotation infrastructure, tools, and analysis.
  • To detail improvements in human and mouse genome annotation.
  • To highlight new resources supporting biological and clinical research.

Main Methods:

  • Utilizing primary data and advanced bioinformatics tools for transcript structure creation and functional determination.
  • Implementing improvements in annotation infrastructure and analysis pipelines.
  • Engaging in collaborative projects for cross-database annotation convergence.

Main Results:

  • Completion of the first pass manual annotation for the mouse reference genome.
  • Targeted annotation improvements for genes linked to SARS-CoV-2 infection.
  • First manually supervised automated annotation of long non-coding RNAs (lncRNAs) by GENCODE.

Conclusions:

  • The updated GENCODE annotation infrastructure and methods yield significant advances in human and mouse genome annotation.
  • These improvements enhance the foundational resource for genome biology and clinical genomics.
  • Accessible via major genome browsers, GENCODE continues to be a vital resource.